IBENS - ENS

2023

Laurent Jourdren — 2023-01-02T07:59:56Z

Cell painting transfer increases screening hit rate.
Cohen E, Corbe M, Franco CA, Vasconcelos FF, Perez F, Del Nery E, Bollot G, Genovesio A
Biol Imaging. 2023. 3:e4.

Practical guidelines for Bayesian phylogenetic inference using Markov Chain Monte Carlo (MCMC).
Barido‑Sottani J, Schwery O, Warnock RCM, Zhang C, Wright AM
Open Res Eur. 2023. 3:204.

KCNN4 links PIEZO-dependent mechanotransduction to NLRP3 inflammasome activation.
Ran L, Ye T, Erbs E, Ehl S, Spassky N, Sumara I, Zhang Z, Ricci R
Sci Immunol. 2023 Dec 22. 8(90):eadf4699.

Transfer learning for versatile and training free high content screening analyses.
Corbe M, Boncompain G, Perez F, Del Nery E, Genovesio A
Sci Rep. 2023 Dec 18. 13(1):22599.

Fast wavefront shaping for two-photon brain imaging with multipatch correction.
Blochet B, Akemann W, Gigan S, Bourdieu L
Proc Natl Acad Sci U S A. 2023 Dec 19. 120(51):e2305593120.

Neural tube-associated boundary caps are a major source of mural cells in the skin.
Gerschenfeld G, Coulpier F, Gresset A, Pulh P, Job B, Topilko T, Siegenthaler J, Kastriti ME, Brunet I, Charnay P, Topilko P
Elife. 2023 Dec 14. 12.

GluD1 binds GABA and controls inhibitory plasticity.
Piot L, Heroven C, Bossi S, Zamith J, Malinauskas T, Johnson C, Wennagel D, Stroebel D, Charrier C, Aricescu AR, Mony L, Paoletti P
Science. 2023 Dec 22. 382(6677):1389-1394.

Airway ciliated cells in adult lung homeostasis and COPD.
Petit LMG, Belgacemi R, Ancel J, Saber Cherif L, Polette M, Perotin JM, Spassky N, Pilette C, Al Alam D, Deslée G, Dormoy V
Eur Respir Rev. 2023 Dec 31. 32(170).

SCO-spondin knockout mice exhibit small brain ventricles and mild spine deformation.
Xu H, Dugué GP, Cantaut‑Belarif Y, Lejeune FX, Gupta S, Wyart C, Lehtinen MK
Fluids Barriers CNS. 2023 Dec 5. 20(1):89.

Effect of the res2 transcription factor gene deletion on protein secretion and stress response in the hyperproducer strain Trichoderma reesei Rut-C30.
Alharake J, Bidard F, Aouam T, Sénamaud‑Beaufort C, Margeot A, Heiss‑Blanquet S
BMC Microbiol. 2023 Nov 30. 23(1):374.

Prdm12 represses the expression of the visceral neuron determinants Phox2a/b in developing somatosensory ganglia.
Vermeiren S, Cabochette P, Dannawi M, Desiderio S, San José AS, Achouri Y, Kricha S, Sitte M, Salinas‑Riester G, Vanhollebeke B, Brunet JF, Bellefroid EJ
iScience. 2023 Dec 15. 26(12):108364.

Viral strain-dependent impact of plant developmental stages on the nestedness and modularity of plant-virus interaction matrices.
Melero I, Elena SF, González R
MicroPubl Biol. 2023. 2023.

Paired single-cell multi-omics data integration with Mowgli.
Huizing GJ, Deutschmann IM, Peyré G, Cantini L
Nat Commun. 2023 Nov 24. 14(1):7711.

Fluorescence to measure light intensity.
Lahlou A, Tehrani HS, Coghill I, Shpinov Y, Mandal M, Plamont MA, Aujard I, Niu Y, Nedbal L, Lazár D, Mahou P, Supatto W, Beaurepaire E, Eisenmann I, Desprat N, Croquette V, Jeanneret R, Le Saux T, Jullien L
Nat Methods. 2023 Dec. 20(12):1930-1938.

Mechanisms of NMDA receptor regulation.
Mony L, Paoletti P
Curr Opin Neurobiol. 2023 Dec. 83:102815.

Genome-wide association and environmental suppression of the mortal germline phenotype of wild C. elegans.
Frézal L, Saglio M, Zhang G, Noble L, Richaud A, Félix MA
EMBO Rep. 2023 Dec 6. 24(12):e58116.

Convergent adaptation of true crabs (Decapoda : Brachyura) to a gradient of terrestrial environments.
Wolfe JM, Ballou L, Luque J, Watson‑Zink VM, Ahyong ST, Barido‑Sottani J, Chan TY, Chu KH, Crandall KA, Daniels SR, Felder DL, Mancke H, Martin JW, Ng PKL, Ortega‑Hernández J, Palacios Theil E, Pentcheff ND, Robles R, Thoma BP, Tsang LM, Wetzer R, Windsor AM, Bracken‑Grissom HD
Syst Biol. 2023 Nov 6.

Alternative splicing induced by bacterial pore-forming toxins sharpens CIRBP-mediated cell response to Listeria infection.
Corre M, Boehm V, Besic V, Kurowska A, Viry A, Mohammad A, Sénamaud‑Beaufort C, Thomas‑Chollier M, Lebreton A
Nucleic Acids Res. 2023 Dec 11. 51(22):12459-12475.

Comprehensive mapping of exon junction complex binding sites reveals universal EJC deposition in Drosophila.
Morillo L, Paternina T, Alasseur Q, Genovesio A, Schwartz S, Le Hir H
BMC Biol. 2023 Nov 7. 21(1):246.

iPS-cell-derived microglia promote brain organoid maturation via cholesterol transfer.
Park DS, Kozaki T, Tiwari SK, Moreira M, Khalilnezhad A, Torta F, Olivié N, Thiam CH, Liani O, Silvin A, Phoo WW, Gao L, Triebl A, Tham WK, Gonçalves L, Kong WT, Raman S, Zhang XM, Dunsmore G, Dutertre CA, Lee S, Ong JM, Balachander A, Khalilnezhad S, Lum J, Duan K, Lim ZM, Tan L, Low I, Utami KH, Yeo XY, Di Tommaso S, Dupuy JW, Varga B, Karadottir RT, Madathummal MC, Bonne I, Malleret B, Binte ZY, Wei Da N, Tan Y, Wong WJ, Zhang J, Chen J, Sobota RM, Howland SW, Ng LG, Saltel F, Castel D, Grill J, Minard V, Albani S, Chan JKY, Thion MS, Jung SY, Wenk MR, Pouladi MA, Pasqualini C, Angeli V, Cexus ONF, Ginhoux F
Nature. 2023 Nov. 623(7986):397-405.

Local glycolysis fuels actomyosin contraction during axonal retraction.
Santos R, Lokmane L, Ozdemir D, Traoré C, Agesilas A, Hakibilen C, Lenkei Z, Zala D
J Cell Biol. 2023 Dec 4. 222(12).

Choroid plexuses carry nodal-like cilia that undergo axoneme regression from early adult stage.
Ho KH, Candat A, Scarpetta V, Faucourt M, Weill S, Salio C, D'Este E, Meschkat M, Wurm CA, Kneussel M, Janke C, Magiera MM, Genovesio A, Meunier A, Sassoè‑Pognetto M, Brill MS, Spassky N, Patrizi A
Dev Cell. 2023 Dec 4. 58(23):2641-2651.e6.

Radial astrocyte synchronization modulates the visual system during behavioral-state transitions.
Uribe‑Arias A, Rozenblat R, Vinepinsky E, Marachlian E, Kulkarni A, Zada D, Privat M, Topsakalian D, Charpy S, Candat V, Nourin S, Appelbaum L, Sumbre G
Neuron. 2023 Dec 20. 111(24):4040-4057.e6.

Revealing invisible cell phenotypes with conditional generative modeling.
Lamiable A, Champetier T, Leonardi F, Cohen E, Sommer P, Hardy D, Argy N, Massougbodji A, Del Nery E, Cottrell G, Kwon YJ, Genovesio A
Nat Commun. 2023 Oct 11. 14(1):6386.

Transcriptomic landscape of posterior regeneration in the annelid Platynereis dumerilii.
Paré L, Bideau L, Baduel L, Dalle C, Benchouaia M, Schneider SQ, Laplane L, Clément Y, Vervoort M, Gazave E
BMC Genomics. 2023 Oct 2. 24(1):583.

Gains and losses of the epiphytic lifestyle in epidendroid orchids : review and new analyses of succulence traits.
Collobert G, Perez‑Lamarque B, Dubuisson JY, Martos F
Ann Bot. 2023 Nov 25. 132(4):787-800.

Disentangling local and global climate drivers in the population dynamics of mosquito-borne infections.
Cazelles B, Cazelles K, Tian H, Chavez M, Pascual M
Sci Adv. 2023 Sep 29. 9(39):eadf7202.

A protocol for whole-brain Ca(2+) imaging in Astyanax mexicanus, a model of comparative evolution.
Lloyd E, Privat M, Sumbre G, Duboué ER, Keene AC
STAR Protoc. 2023 Dec 15. 4(4):102517.

Predicting global distributions of eukaryotic plankton communities from satellite data.
Kaneko H, Endo H, Henry N, Berney C, Mahé F, Poulain J, Labadie K, Beluche O, El Hourany R, Chaffron S, Wincker P, Nakamura R, Karp‑Boss L, Boss E, Bowler C, de Vargas C, Tomii K, Ogata H
ISME Commun. 2023 Sep 22. 3(1):101.

Human-environment feedback and the consistency of proenvironmental behavior.
Ecotière C, Billiard S, André JB, Collet P, Ferrière R, Méléard S
PLoS Comput Biol. 2023 Sep. 19(9):e1011429.

Self-organizing models of human trunk organogenesis recapitulate spinal cord and spine co-morphogenesis.
Gribaudo S, Robert R, van Sambeek B, Mirdass C, Lyubimova A, Bouhali K, Ferent J, Morin X, van Oudenaarden A, Nedelec S
Nat Biotechnol. 2023 Sep 14.

Multi-feature clustering of CTCF binding creates robustness for loop extrusion blocking and Topologically Associating Domain boundaries.
Chang LH, Ghosh S, Papale A, Luppino JM, Miranda M, Piras V, Degrouard J, Edouard J, Poncelet M, Lecouvreur N, Bloyer S, Leforestier A, Joyce EF, Holcman D, Noordermeer D
Nat Commun. 2023 Sep 12. 14(1):5615.

Real-time detection of virus antibody interaction by label-free common-path interferometry.
Alhaddad S, Bey H, Thouvenin O, Boulanger P, Boccara C, Boccara M, Izeddin I
Biophys Rep (N Y). 2023 Sep 13. 3(3):100119.

Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation.
Sanz‑Sáez I, Sánchez P, Salazar G, Sunagawa S, de Vargas C, Bowler C, Sullivan MB, Wincker P, Karsenti E, Pedrós‑Alió C, Agustí S, Gojobori T, Duarte CM, Gasol JM, Sánchez O, Acinas SG
ISME Commun. 2023 Sep 2. 3(1):92.

Selection and the direction of phenotypic evolution.
Mallard F, Afonso B, Teotónio H
Elife. 2023 Aug 31. 12.

Global determinants of insect mitochondrial genetic diversity.
French CM, Bertola LD, Carnaval AC, Economo EP, Kass JM, Lohman DJ, Marske KA, Meier R, Overcast I, Rominger AJ, Staniczenko PPA, Hickerson MJ
Nat Commun. 2023 Aug 29. 14(1):5276.

Phylogenetic modeling of enhancer shifts in African mole-rats reveals regulatory changes associated with tissue-specific traits.
Parey E, Fernandez‑Aroca D, Frost S, Uribarren A, Park TJ, Zöttl M, St John Smith E, Berthelot C, Villar D
Genome Res. 2023 Sep. 33(9):1513-1526.

Ocean-wide comparisons of mesopelagic planktonic community structures.
Rigonato J, Budinich M, Murillo AA, Brandão MC, Pierella Karlusich JJ, Soviadan YD, Gregory AC, Endo H, Kokoszka F, Vik D, Henry N, Frémont P, Labadie K, Zayed AA, Dimier C, Picheral M, Searson S, Poulain J, Kandels S, Pesant S, Karsenti E, Bork P, Bowler C, de Vargas C, Eveillard D, Gehlen M, Iudicone D, Lombard F, Ogata H, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Chaffron S, Jaillon O
ISME Commun. 2023 Aug 18. 3(1):83.

Model of membrane deformations driven by a surface pH gradient.
Mendes TV, Ranft J, Berthoumieux H
Phys Rev E. 2023 Jul. 108(1-1):014113.

Special issue : Synaptic logistics - Maintenance of synaptic composition, properties and function.
Ziv NE, Triller A
Mol Cell Neurosci. 2023 Dec. 127:103885.

Deep Learning from Phylogenies for Diversification Analyses.
Lambert S, Voznica J, Morlon H
Syst Biol. 2023 Dec 30. 72(6):1262-1279.

Plasticity of thalamocortical axons is regulated by serotonin levels modulated by preterm birth.
Sinclair‑Wilson A, Lawrence A, Ferezou I, Cartonnet H, Mailhes C, Garel S, Lokmane L
Proc Natl Acad Sci U S A. 2023 Aug 15. 120(33):e2301644120.

Rif1 restrains the rate of replication origin firing in Xenopus laevis.
Haccard O, Ciardo D, Narrissamprakash H, Bronchain O, Kumagai A, Dunphy WG, Goldar A, Marheineke K
Commun Biol. 2023 Jul 29. 6(1):788.

Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis.
Teano G, Concia L, Wolff L, Carron L, Biocanin I, Adamusová K, Fojtová M, Bourge M, Kramdi A, Colot V, Grossniklaus U, Bowler C, Baroux C, Carbone A, Probst AV, Schrumpfová PP, Fajkus J, Amiard S, Grob S, Bourbousse C, Barneche F
Cell Rep. 2023 Aug 29. 42(8):112894.

A genome-wide screen reveals new regulators of the 2-cell-like cell state.
Gupta N, Yakhou L, Albert JR, Azogui A, Ferry L, Kirsh O, Miura F, Battault S, Yamaguchi K, Laisné M, Domrane C, Bonhomme F, Sarkar A, Delagrange M, Ducos B, Cristofari G, Ito T, Greenberg MVC, Defossez PA
Nat Struct Mol Biol. 2023 Aug. 30(8):1105-1118.

Evolutionary modifications of Astyanax larval prey capture (LPC) in a dark environment.
Espinasa L, Diamant R, Vinepinsky E, Espinasa M
Zool Res. 2023 Jul 18. 44(4):750-760.

Differences in carbonate chemistry up-regulation of long-lived reef-building corals.
Canesi M, Douville E, Montagna P, Taviani M, Stolarski J, Bordier L, Dapoigny A, Coulibaly GEH, Simon AC, Agelou M, Fin J, Metzl N, Iwankow G, Allemand D, Planes S, Moulin C, Lombard F, Bourdin G, Troublé R, Agostini S, Banaigs B, Boissin E, Boss E, Bowler C, de Vargas C, Flores M, Forcioli D, Furla P, Gilson E, Galand PE, Pesant S, Sunagawa S, Thomas OP, Vega Thurber R, Voolstra CR, Wincker P, Zoccola D, Reynaud S
Sci Rep. 2023 Jul 18. 13(1):11589.

Diversity of dynamic voltage patterns in neuronal dendrites revealed by nanopipette electrophysiology.
Mc Hugh J, Makarchuk S, Mozheiko D, Fernandez‑Villegas A, Kaminski Schierle GS, Kaminski CF, Keyser UF, Holcman D, Rouach N
Nanoscale. 2023 Jul 27. 15(29):12245-12254.

The genetic basis of epigenetic variation and its consequences for adaptation.
Baduel P, Sasaki E
Curr Opin Plant Biol. 2023 Oct. 75:102409.

G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions.
Esnault C, Magat T, Zine El Aabidine A, Garcia‑Oliver E, Cucchiarini A, Bouchouika S, Lleres D, Goerke L, Luo Y, Verga D, Lacroix L, Feil R, Spicuglia S, Mergny JL, Andrau JC
Nat Genet. 2023 Aug. 55(8):1359-1369.

Editorial : Neurobiology of Drosophila : the 19th NeuroFly-2022 meeting.
Martin JR, Chatterjee A, Salecker I
Front Physiol. 2023. 14:1237065.

Natural antisense transcription of presenilin in sea urchin reveals a possible role for natural antisense transcription in the general control of gene expression during development.
Bronchain O, Ducos B, Putzer H, Delagrange M, Laalami S, Philippe‑Caraty L, Saroul K, Ciapa B
J Cell Sci. 2023 Jul 15. 136(14).

Diverse eukaryotic phytoplankton from around the Marquesas Islands documented by combined microscopy and molecular techniques.
Veselá‑Strejcová J, Scalco E, Zingone A, Colin S, Caputi L, Sarno D, Nebesářová J, Bowler C, Lukeš J
Protist. 2023 Aug. 174(4):125965.

Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota.
Perez‑Lamarque B, Sommeria‑Klein G, Duret L, Morlon H
Mol Biol Evol. 2023 Jul 5. 40(7).

Repurposing of the multiciliation gene regulatory network in fate specification of Cajal-Retzius neurons.
Moreau MX, Saillour Y, Elorriaga V, Bouloudi B, Delberghe E, Deutsch Guerrero T, Ochandorena‑Saa A, Maeso‑Alonso L, Marques MM, Marin MC, Spassky N, Pierani A, Causeret F
Dev Cell. 2023 Aug 7. 58(15):1365-1382.e6.

Y-complex nucleoporins independently contribute to nuclear pore assembly and gene regulation in neuronal progenitors.
Orniacki C, Verrico A, Pelletier S, Souquet B, Coulpier F, Jourdren L, Benetti S, Doye V
J Cell Sci. 2023 Jun 1. 136(11).

Artificial selection of communities drives the emergence of structured interactions.
Fraboul J, Biroli G, De Monte S
J Theor Biol. 2023 Aug 21. 571:111557.

Combining DNA scaffolds and acoustic force spectroscopy to characterize individual protein bonds.
Wang YJ, Valotteau C, Aimard A, Villanueva L, Kostrz D, Follenfant M, Strick T, Chames P, Rico F, Gosse C, Limozin L
Biophys J. 2023 Jun 20. 122(12):2518-2530.

Magnetic actuation of otoliths allows behavioral and brain-wide neuronal exploration of vestibulo-motor processing in larval zebrafish.
Beiza‑Canelo N, Moulle H, Pujol T, Panier T, Migault G, Le Goc G, Tapie P, Desprat N, Straka H, Debrégeas G, Bormuth V
Curr Biol. 2023 Jun 19. 33(12):2438-2448.e6.

A QTL on chromosome IV explains a natural variation of QR.pap final position in Caenorhabditis elegans.
Dubois C, Félix MA
MicroPubl Biol. 2023. 2023.

Pervasive tandem duplications and convergent evolution shape coral genomes.
Noel B, Denoeud F, Rouan A, Buitrago‑López C, Capasso L, Poulain J, Boissin E, Pousse M, Da Silva C, Couloux A, Armstrong E, Carradec Q, Cruaud C, Labadie K, Lê‑Hoang J, Tambutté S, Barbe V, Moulin C, Bourdin G, Iwankow G, Romac S, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores JM, Forcioli D, Furla P, Galand PE, Lombard F, Pesant S, Reynaud S, Sullivan MB, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Allemand D, Planes S, Gilson E, Zoccola D, Wincker P, Voolstra CR, Aury JM
Genome Biol. 2023 Jun 1. 24(1):123.

Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes.
Veglia AJ, Bistolas KSI, Voolstra CR, Hume BCC, Ruscheweyh HJ, Planes S, Allemand D, Boissin E, Wincker P, Poulain J, Moulin C, Bourdin G, Iwankow G, Romac S, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores M, Forcioli D, Furla P, Galand PE, Gilson E, Lombard F, Pesant S, Reynaud S, Sunagawa S, Thomas OP, Troublé R, Zoccola D, Correa AMS, Vega Thurber RL
Commun Biol. 2023 Jun 1. 6(1):566.

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition.
Belser C, Poulain J, Labadie K, Gavory F, Alberti A, Guy J, Carradec Q, Cruaud C, Da Silva C, Engelen S, Mielle P, Perdereau A, Samson G, Gas S, Voolstra CR, Galand PE, Flores JM, Hume BCC, Perna G, Ziegler M, Ruscheweyh HJ, Boissin E, Romac S, Bourdin G, Iwankow G, Moulin C, Paz García DA, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Forcioli D, Furla P, Gilson E, Lombard F, Pesant S, Reynaud S, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Zoccola D, Scarpelli C, Jacoby EK, Oliveira PH, Aury JM, Allemand D, Planes S, Wincker P
Sci Data. 2023 Jun 1. 10(1):326.

Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.
Armstrong EJ, Lê‑Hoang J, Carradec Q, Aury JM, Noel B, Hume BCC, Voolstra CR, Poulain J, Belser C, Paz‑García DA, Cruaud C, Labadie K, Da Silva C, Moulin C, Boissin E, Bourdin G, Iwankow G, Romac S, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores M, Forcioli D, Furla P, Galand PE, Gilson E, Lombard F, Pesant S, Reynaud S, Sullivan MB, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Zoccola D, Planes S, Allemand D, Wincker P
Nat Commun. 2023 Jun 1. 14(1):3056.

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems.
Lombard F, Bourdin G, Pesant S, Agostini S, Baudena A, Boissin E, Cassar N, Clampitt M, Conan P, Da Silva O, Dimier C, Douville E, Elineau A, Fin J, Flores JM, Ghiglione JF, Hume BCC, Jalabert L, John SG, Kelly RL, Koren I, Lin Y, Marie D, McMinds R, Mériguet Z, Metzl N, Paz‑García DA, Pedrotti ML, Poulain J, Pujo‑Pay M, Ras J, Reverdin G, Romac S, Rouan A, Röttinger E, Vardi A, Voolstra CR, Moulin C, Iwankow G, Banaigs B, Bowler C, de Vargas C, Forcioli D, Furla P, Galand PE, Gilson E, Reynaud S, Sunagawa S, Sullivan MB, Thomas OP, Troublé R, Thurber RV, Wincker P, Zoccola D, Allemand D, Planes S, Boss E, Gorsky G
Sci Data. 2023 Jun 1. 10(1):324.

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.
Hochart C, Paoli L, Ruscheweyh HJ, Salazar G, Boissin E, Romac S, Poulain J, Bourdin G, Iwankow G, Moulin C, Ziegler M, Porro B, Armstrong EJ, Hume BCC, Aury JM, Pogoreutz C, Paz‑García DA, Nugues MM, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores M, Forcioli D, Furla P, Gilson E, Lombard F, Pesant S, Reynaud S, Thomas OP, Troublé R, Wincker P, Zoccola D, Allemand D, Planes S, Thurber RV, Voolstra CR, Sunagawa S, Galand PE
Nat Commun. 2023 Jun 1. 14(1):3037.

Diversity of the Pacific Ocean coral reef microbiome.
Galand PE, Ruscheweyh HJ, Salazar G, Hochart C, Henry N, Hume BCC, Oliveira PH, Perdereau A, Labadie K, Belser C, Boissin E, Romac S, Poulain J, Bourdin G, Iwankow G, Moulin C, Armstrong EJ, Paz‑García DA, Ziegler M, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores M, Forcioli D, Furla P, Gilson E, Lombard F, Pesant S, Reynaud S, Thomas OP, Troublé R, Zoccola D, Voolstra CR, Thurber RV, Sunagawa S, Wincker P, Allemand D, Planes S
Nat Commun. 2023 Jun 1. 14(1):3039.

Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.
Rouan A, Pousse M, Djerbi N, Porro B, Bourdin G, Carradec Q, Hume BC, Poulain J, Lê‑Hoang J, Armstrong E, Agostini S, Salazar G, Ruscheweyh HJ, Aury JM, Paz‑García DA, McMinds R, Giraud‑Panis MJ, Deshuraud R, Ottaviani A, Morini LD, Leone C, Wurzer L, Tran J, Zoccola D, Pey A, Moulin C, Boissin E, Iwankow G, Romac S, de Vargas C, Banaigs B, Boss E, Bowler C, Douville E, Flores M, Reynaud S, Thomas OP, Troublé R, Thurber RV, Planes S, Allemand D, Pesant S, Galand PE, Wincker P, Sunagawa S, Röttinger E, Furla P, Voolstra CR, Forcioli D, Lombard F, Gilson E
Nat Commun. 2023 Jun 1. 14(1):3038.

Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths.
Arbona JM, Kabalane H, Barbier J, Goldar A, Hyrien O, Audit B
PLoS Comput Biol. 2023 May. 19(5):e1011138.

Excitatory GluN1/GluN3A glycine receptors (eGlyRs) in brain signaling.
Bossi S, Pizzamiglio L, Paoletti P
Trends Neurosci. 2023 Aug. 46(8):667-681.

Single-cell phenotypic plasticity modulates social behavior in Dictyostelium discoideum.
Forget M, Adiba S, De Monte S
iScience. 2023 Jun 16. 26(6):106783.

Cerebellar control of fear learning via the cerebellar nuclei-Multiple pathways, multiple mechanisms ?
Urrutia Desmaison JD, Sala RW, Ayyaz A, Nondhalee P, Popa D, Léna C
Front Syst Neurosci. 2023. 17:1176668.

Inferring the ecological and evolutionary determinants of community genetic diversity.
Overcast I, Noguerales V, Meramveliotakis E, Andújar C, Arribas P, Creedy TJ, Emerson BC, Vogler AP, Papadopoulou A, Morlon H
Mol Ecol. 2023 Dec. 32(23):6093-6109.

Upregulation of breathing rate during running exercise by central locomotor circuits in mice.
Hérent C, Diem S, Usseglio G, Fortin G, Bouvier J
Nat Commun. 2023 May 22. 14(1):2939.

Theory of the asynchronous state of structured rotator networks and its application to recurrent networks of excitatory and inhibitory units.
Ranft J, Lindner B
Phys Rev E. 2023 Apr. 107(4-1):044306.

Wavelet clustering analysis as a tool for characterizing community structure in the human microbiome.
Benincà E, Pinto S, Cazelles B, Fuentes S, Shetty S, Bogaards JA
Sci Rep. 2023 May 17. 13(1):8042.

Prox2 and Runx3 vagal sensory neurons regulate esophageal motility.
Lowenstein ED, Ruffault PL, Misios A, Osman KL, Li H, Greenberg RS, Thompson R, Song K, Dietrich S, Li X, Vladimirov N, Woehler A, Brunet JF, Zampieri N, Kühn R, Liberles SD, Jia S, Lewin GR, Rajewsky N, Lever TE, Birchmeier C
Neuron. 2023 Jul 19. 111(14):2184-2200.e7.

Protein Biomarkers of New-Onset Heart Failure : Insights From the Heart Omics and Ageing Cohort, the Atherosclerosis Risk in Communities Study, and the Framingham Heart Study.
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Interpreting the pervasive observation of U-shaped Site Frequency Spectra.
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At the crossroads of epidemiology and biology : Bridging the gap between SARS-CoV-2 viral strain properties and epidemic wave characteristics.
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The model diatom Phaeodactylum tricornutum provides insights into the diversity and function of microeukaryotic DNA methyltransferases.
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Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists.
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Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches.
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Author Correction : Astroblastomas exhibit radial glia stem cell lineages and differential expression of imprinted and X-inactivation escape genes.
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SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event.
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Towards evolutionary predictions : Current promises and challenges.
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Plastic responses lead to increased neurotoxin production in the diatom Pseudo-nitzschia under ocean warming and acidification.
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Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions.
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Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom.
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Nat Ecol Evol. 2023 Mar. 7(3):355-366.

Annexin A1 is a polarity cue that directs mitotic spindle orientation during mammalian epithelial morphogenesis.
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Microglial TNFα orchestrates protein phosphorylation in the cortex during the sleep period and controls homeostatic sleep.
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Estimating the Age of Poorly Dated Fossil Specimens and Deposits Using a Total-Evidence Approach and the Fossilized Birth-Death Process.
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In mice and humans, brain microvascular contractility matures postnatally.
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Quantifying postsynaptic receptor dynamics : insights into synaptic function.
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KCa1.1 channels contribute to optogenetically driven post-stimulation silencing in cerebellar molecular layer interneurons.
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Collective and harmonized high throughput barcoding of insular arthropod biodiversity : Toward a Genomic Observatories Network for islands.
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Comparing different computational approaches for detecting long-term vertical transmission in host-associated microbiota.
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes.
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Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a mosaic of montane forests.
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2022

Laurent Jourdren — 2022-01-03T07:48:51Z

Principled, practical, flexible, fast : a new approach to phylogenetic factor analysis.
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean.
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Cell Genom. 2022 May 11. 2(5):100123.

FUSTA : leveraging FUSE for manipulation of multiFASTA files at scale.
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Neurotransmitter content heterogeneity within an interneuron class shapes inhibitory transmission at a central synapse.
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Guidelines for G-quadruplexes : I. In vitro characterization.
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Biochimie. 2022 Dec 31.

In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in Phaeodactylum tricornutum.
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p53/p21 pathway activation contributes to the ependymal fate decision downstream of GemC1.
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Philippe Ascher (1936-2022).
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A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA.
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Alterations of the axon initial segment in multiple sclerosis grey matter.
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Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros.
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Evaluating cancer etiology and risk with a mathematical model of tumor evolution.
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Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process.
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Microglia states and nomenclature : A field at its crossroads.
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Zn(2+) inhibits spatial memory and hippocampal place cell representation through high-affinity binding to the NMDA receptor GluN2A subunit.
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Dynamic Regulation of Mitochondrial [Ca(2+)] in Hippocampal Neurons.
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Int J Mol Sci. 2022 Oct 14. 23(20).

Advanced Image Analysis Methods for Automated Segmentation of Subnuclear Chromatin Domains.
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Epigenomes. 2022 Oct 5. 6(4).

Fate and biological impact of persistent luminescence nanoparticles after injection in mice : a one-year follow-up.
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A metabolic, phylogenomic and environmental atlas of diatom plastid transporters from the model species Phaeodactylum.
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Front Plant Sci. 2022. 13:950467.

Flux coupling, not specificity, shapes the transport and phylogeny of SLC6 glycine transporters.
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Proc Natl Acad Sci U S A. 2022 Oct 11. 119(41):e2205874119.

From individual-based epidemic models to McKendrick-von Foerster PDEs : a guide to modeling and inferring COVID-19 dynamics.
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The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses.
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Gene essentiality and variability : What is the link ? A within- and between-species perspective.
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Individual differences in cocaine-induced conditioned place preference in male rats : Behavioral and transcriptomic evidence.
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J Psychopharmacol. 2022 Oct. 36(10):1161-1175.

Evolving social behavior through selection of single-cell adhesion in Dictyostelium discoideum.
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iScience. 2022 Sep 16. 25(9):105006.

Computational methods and diffusion theory in triangulation sensing to model neuronal navigation.
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Rep Prog Phys. 2022 Oct 5. 85(10).

Comparing different computational approaches for detecting long-term vertical transmission in host-associated microbiota.
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Mol Ecol. 2022 Sep 6.

High-throughput super-resolution single-particle trajectory analysis reconstructs organelle dynamics and membrane reorganization.
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Cell Rep Methods. 2022 Aug 22. 2(8):100277.

Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling.
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The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants.
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Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations.
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Viruses. 2022 Jul 27. 14(8).

An interplay between cellular growth and atypical fusion defines morphogenesis of a modular glial niche in Drosophila.
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The Waiting Room Hypothesis revisited by orchids : were orchid mycorrhizal fungi recruited among root endophytes ?
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Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean.
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Coming of age for COI metabarcoding of whole organism community DNA : Towards bioinformatic harmonisation.
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2021

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Fourier Motion Processing in the Optic Tectum and Pretectum of the Zebrafish Larva.
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Mol Biomed. 2021 Apr 1. 2(1):9.

Editorial : Mixotrophic, Secondary Heterotrophic, and Parasitic Algae.
Oborník M, Dorrell RG, Tikhonenkov DV
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Tuning Physicochemical Properties of a Macroporous Polysaccharide-Based Scaffold for 3D Neuronal Culture.
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Identification of a stereotypic molecular arrangement of endogenous glycine receptors at spinal cord synapses.
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Engineering of a fluorescent chemogenetic reporter with tunable color for advanced live-cell imaging.
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Ligands binding to the prion protein induce its proteolytic release with therapeutic potential in neurodegenerative proteinopathies.
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean.
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Expression Pattern of Purinergic Signaling Components in Colorectal Cancer Cells and Differential Cellular Outcomes Induced by Extracellular ATP and Adenosine.
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Infection of C. elegans by Haptoglossa Species Reveals Shared Features in the Host Response to Oomycete Detection.
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HSV-1 ICP22 Is a Selective Viral Repressor of Cellular RNA Polymerase II-Mediated Transcription Elongation.
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Editorial : Latest Advances on Excitatory Synapse Biology.
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Author Correction : Macroscale patterns of oceanic zooplankton composition and size structure.
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Inertial Measurement of Head Tilt in Rodents : Principles and Applications to Vestibular Research.
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Transcriptome and Methylome Analysis Reveal Complex Cross-Talks between Thyroid Hormone and Glucocorticoid Signaling at Xenopus Metamorphosis.
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Cells. 2021 Sep 9. 10(9).

Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly-The Ithomiini Melinaea marsaeus.
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RapGreen, an interactive software and web package to explore and analyze phylogenetic trees.
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Nanoscale molecular architecture controls calcium diffusion and ER replenishment in dendritic spines.
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NMDARs in granule cells contribute to parallel fiber-Purkinje cell synaptic plasticity and motor learning.
Schonewille M, Girasole AE, Rostaing P, Mailhes‑Hamon C, Ayon A, Nelson AB, Triller A, Casado M, De Zeeuw CI, Bouvier G
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The bowfin genome illuminates the developmental evolution of ray-finned fishes.
Thompson AW, Hawkins MB, Parey E, Wcisel DJ, Ota T, Kawasaki K, Funk E, Losilla M, Fitch OE, Pan Q, Feron R, Louis A, Montfort J, Milhes M, Racicot BL, Childs KL, Fontenot Q, Ferrara A, David SR, McCune AR, Dornburg A, Yoder JA, Guiguen Y, Roest Crollius H, Berthelot C, Harris MP, Braasch I
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An alternative D. melanogaster 7SK snRNP.
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BMC Mol Cell Biol. 2021 Aug 31. 22(1):43.

Selective Cleaning of Wild Caenorhabditis Nematodes to Enrich for Intestinal Microbiome Bacteria.
Morgan E, Longares JF, Félix MA, Luallen RJ
J Vis Exp. 2021 Aug 13. (174).

Environmental vulnerability of the global ocean epipelagic plankton community interactome.
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OTX2 Homeoprotein Functions in Adult Choroid Plexus.
Planques A, Oliveira Moreira V, Benacom D, Bernard C, Jourdren L, Blugeon C, Dingli F, Masson V, Loew D, Prochiantz A, Di Nardo AA
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Organization of DNA Replication Origin Firing in Xenopus Egg Extracts : The Role of Intra-S Checkpoint.
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Tempo and mode of morphological evolution are decoupled from latitude in birds.
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PLoS Biol. 2021 Aug. 19(8):e3001270.

Unique properties of dually innervated dendritic spines in pyramidal neurons of the somatosensory cortex uncovered by 3D correlative light and electron microscopy.
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Functional analysis of a de novo variant in the neurodevelopment and generalized epilepsy disease gene NBEA.
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Identification and functional modelling of plausibly causative cis-regulatory variants in a highly-selected cohort with X-linked intellectual disability.
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Full-Length Transcriptome of Thalassiosira weissflogii as a Reference Resource and Mining of Chitin-Related Genes.
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Mar Drugs. 2021 Jul 13. 19(7).

GluN2A and GluN2B NMDA receptors use distinct allosteric routes.
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Macroscale patterns of oceanic zooplankton composition and size structure.
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Dynamics of the COVID-19 epidemic in Ireland under mitigation.
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BMC Infect Dis. 2021 Aug 3. 21(1):735.

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes.
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A mechanistic and data-driven reconstruction of the time-varying reproduction number : Application to the COVID-19 epidemic.
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Cascading effects of moth outbreaks on subarctic soil food webs.
Calderón‑Sanou I, Münkemüller T, Zinger L, Schimann H, Yoccoz NG, Gielly L, Foulquier A, Hedde M, Ohlmann M, Roy M, Si‑Moussi S, Thuiller W
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When the cerebellum holds the starting gun.
Frontera JL, Léna C
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The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime.
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods.
Pierella Karlusich JJ, Pelletier E, Lombard F, Carsique M, Dvorak E, Colin S, Picheral M, Cornejo‑Castillo FM, Acinas SG, Pepperkok R, Karsenti E, de Vargas C, Wincker P, Bowler C, Foster RA
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A morphological trait involved in reproductive isolation between Drosophila sister species is sensitive to temperature.
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Gating mechanism and a modulatory niche of human GluN1-GluN2A NMDA receptors.
Wang H, Lv S, Stroebel D, Zhang J, Pan Y, Huang X, Zhang X, Paoletti P, Zhu S
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Capturing the rapidly evolving study of adaptation.
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Logical modelling of in vitro differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions.
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Archaea : A Gold Mine for Topoisomerase Diversity.
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Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms.
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Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis.
Huang Y, Sicar S, Ramirez‑Prado JS, Manza‑Mianza D, Antunez‑Sanchez J, Brik‑Chaouche R, Rodriguez‑Granados NY, An J, Bergounioux C, Mahfouz MM, Hirt H, Crespi M, Concia L, Barneche F, Amiard S, Probst AV, Gutierrez‑Marcos J, Ariel F, Raynaud C, Latrasse D, Benhamed M
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Glycine agonism in ionotropic glutamate receptors.
Stroebel D, Mony L, Paoletti P
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Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut.
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Differential regulation of glycinergic and GABAergic nanocolumns at mixed inhibitory synapses.
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Biodiversity monitoring using environmental DNA.
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Testing the adaptive value of sporulation in budding yeast using experimental evolution.
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Evolution. 2021 Jul. 75(7):1889-1897.

Modeling the Th17 and Tregs Paradigm : Implications for Cancer Immunotherapy.
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Front Cell Dev Biol. 2021. 9:675099.

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.
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Commun Biol. 2021 May 21. 4(1):604.

Author Correction : The impact of transposable elements on tomato diversity.
Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez‑Gómez JM, Colot V, Quadrana L
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Folding and persistence times of intramolecular G-quadruplexes transiently embedded in a DNA duplex.
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Coevolutionary transitions from antagonism to mutualism explained by the Co-Opted Antagonist Hypothesis.
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Nat Commun. 2021 May 17. 12(1):2867.

Carbon Dioxide Concentration Mechanisms in Natural Populations of Marine Diatoms : Insights From Tara Oceans.
Pierella Karlusich JJ, Bowler C, Biswas H
Front Plant Sci. 2021. 12:657821.

Ecological recipes for selecting community function.
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Analysis of waveform and amplitude of mouse rod and cone flash responses.
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J Physiol. 2021 Jul. 599(13):3295-3312.

Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana.
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A microfluidic dosimetry cell to irradiate solutions with poorly penetrating radiations : a step towards online dosimetry for synchrotron beamlines.
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Jumpstarting evolution : How transposition can facilitate adaptation to rapid environmental changes.
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Correction to : Macromolecular interactions in vitro, comparing classical and novel approaches.
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Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data.
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Detection of Transposable Element Insertions in Arabidopsis Using Sequence Capture.
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Chromatin stability generated by stochastic binding and unbinding of cross-linkers at looping sites revealed by Markov models.
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The epiallelic potential of transposable elements and its evolutionary significance in plants.
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Philos Trans R Soc Lond B Biol Sci. 2021 Jun 7. 376(1826):20200123.

How does epigenetics influence the course of evolution ?
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A decadal perspective on north water microbial eukaryotes as Arctic Ocean sentinels.
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Sci Rep. 2021 Apr 16. 11(1):8413.

Engineered chlorophyll catabolism conferring predator resistance for microalgal biomass production.
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Magnetic Tweezers-Based Single-Molecule Assays to Study Interaction of E. coli SSB with DNA and RecQ Helicase.
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DNA molecular combing-based replication fork directionality profiling.
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Nucleic Acids Res. 2021 Jul 9. 49(12):e69.

Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms.
Kang Y, Thieffry D, Cantini L
Front Genet. 2021. 12:617282.

Cotranscriptional R-loop formation by Mfd involves topological partitioning of DNA.
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Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans.
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In Memoriam Claudina Rodrigues-Pousada (1941-2021), a dedicated woman in science.
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Macromolecular interactions in vitro, comparing classical and novel approaches.
Velours C, Aumont‑Nicaise M, Uebel S, England P, Velazquez‑Campoy A, Stroebel D, Bec G, Soule P, Quétard C, Ebel C, Roussel A, Charbonnier JB, Varela PF
Eur Biophys J. 2021 May. 50(3-4):313-330.

On the importance of evolutionary constraint for regulatory sequence identification.
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Brief Funct Genomics. 2021 Mar 23.

Stochastic Epidemic Models inference and diagnosis with Poisson Random Measure Data Augmentation.
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DET1-mediated COP1 regulation avoids HY5 activity over second-site gene targets to tune plant photomorphogenesis.
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Publisher Correction : Detection of genetic variation and base modifications at base-pair resolution on both DNA and RNA.
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Gene-level quantitative trait mapping in Caenorhabditis elegans.
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G3 (Bethesda). 2021 Feb 9. 11(2).

Iron metabolism strategies in diatoms.
Gao X, Bowler C, Kazamia E
J Exp Bot. 2021 Mar 17. 72(6):2165-2180.

Evolution : Drivers in a Traffic Jam.
Félix MA
Curr Biol. 2021 Mar 8. 31(5):R257-R260.

Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones.
Kirstein N, Buschle A, Wu X, Krebs S, Blum H, Kremmer E, Vorberg IM, Hammerschmidt W, Lacroix L, Hyrien O, Audit B, Schepers A
Elife. 2021 Mar 8. 10.

Comparison of SYK Signaling Networks Reveals the Potential Molecular Determinants of Its Tumor-Promoting and Suppressing Functions.
Buffard M, Naldi A, Freiss G, Deckert M, Radulescu O, Coopman PJ, Larive RM
Biomolecules. 2021 Feb 18. 11(2).

Sushi domain-containing protein 4 controls synaptic plasticity and motor learning.
González‑Calvo I, Iyer K, Carquin M, Khayachi A, Giuliani FA, Sigoillot SM, Vincent J, Séveno M, Veleanu M, Tahraoui S, Albert M, Vigy O, Bosso‑Lefèvre C, Nadjar Y, Dumoulin A, Triller A, Bessereau JL, Rondi‑Reig L, Isope P, Selimi F
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Exon junction complex dependent mRNA localization is linked to centrosome organization during ciliogenesis.
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Nat Commun. 2021 Mar 1. 12(1):1351.

A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.
Safieddine A, Coleno E, Salloum S, Imbert A, Traboulsi AM, Kwon OS, Lionneton F, Georget V, Robert MC, Gostan T, Lecellier CH, Chouaib R, Pichon X, Le Hir H, Zibara K, Mueller F, Walter T, Peter M, Bertrand E
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Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates.
Andrade P, Gazda MA, Araújo PM, Afonso S, Rasmussen JA, Marques CI, Lopes RJ, Gilbert MTP, Carneiro M
PLoS Genet. 2021 Feb. 17(2):e1009404.

Thermal and pH Stabilities of i-DNA : Confronting in vitro Experiments with Models and In-Cell NMR Data.
Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL
Angew Chem Int Ed Engl. 2021 Apr 26. 60(18):10286-10294.

Temporally regulated cell migration is sensitive to variation in body size.
Dubois C, Gupta S, Mugler A, Félix MA
Development. 2021 Mar 5. 148(5).

Dynamics of Ku and bacterial non-homologous end-joining characterized using single DNA molecule analysis.
Öz R, Wang JL, Guerois R, Goyal G, Kk S, Ropars V, Sharma R, Koca F, Charbonnier JB, Modesti M, Strick TR, Westerlund F
Nucleic Acids Res. 2021 Mar 18. 49(5):2629-2641.

Complex Response of the Chlorarachniophyte Bigelowiella natans to Iron Availability.
Kotabova E, Malych R, Pierella Karlusich JJ, Kazamia E, Eichner M, Mach J, Lesuisse E, Bowler C, Prášil O, Sutak R
mSystems. 2021 Feb 9. 6(1).

Parallel, linear, and subnanometric 3D tracking of microparticles with Stereo Darkfield Interferometry.
Rieu M, Vieille T, Radou G, Jeanneret R, Ruiz‑Gutierrez N, Ducos B, Allemand JF, Croquette V
Sci Adv. 2021 Feb. 7(6).

Parallel trends in the transmission of SARS-CoV-2 and retail/recreation and public transport mobility during non-lockdown periods.
Cazelles B, Comiskey C, Nguyen‑Van‑Yen B, Champagne C, Roche B
Int J Infect Dis. 2021 Mar. 104:693-695.

Reciprocal stabilization of glycine receptors and gephyrin scaffold proteins at inhibitory synapses.
Chapdelaine T, Hakim V, Triller A, Ranft J, Specht CG
Biophys J. 2021 Mar 2. 120(5):805-817.

Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum.
Hoguin A, Rastogi A, Bowler C, Tirichine L
Sci Rep. 2021 Feb 3. 11(1):2954.

A single-nucleotide change underlies the genetic assimilation of a plastic trait.
Vigne P, Gimond C, Ferrari C, Vielle A, Hallin J, Pino‑Querido A, El Mouridi S, Mignerot L, Frøkjær‑Jensen C, Boulin T, Teotónio H, Braendle C
Sci Adv. 2021 Feb. 7(6).

Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum.
Zhao X, Rastogi A, Deton Cabanillas AF, Ait Mohamed O, Cantrel C, Lombard B, Murik O, Genovesio A, Bowler C, Bouyer D, Loew D, Lin X, Veluchamy A, Vieira FRJ, Tirichine L
New Phytol. 2021 Mar. 229(6):3208-3220.

Detection of genetic variation and base modifications at base-pair resolution on both DNA and RNA.
Wang Z, Maluenda J, Giraut L, Vieille T, Lefevre A, Salthouse D, Radou G, Moulinas R, Astete S, D'Avezac P, Smith G, André C, Allemand JF, Bensimon D, Croquette V, Ouellet J, Hamilton G
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Density-dependent natural selection mediates harvest-induced trait changes.
Bouffet‑Halle A, Mériguet J, Carmignac D, Agostini S, Millot A, Perret S, Motard E, Decenciere B, Edeline E
Ecol Lett. 2021 Apr. 24(4):648-657.

Learning-dependent plasticity in the antennal lobe improves discrimination and recognition of odors in the honeybee.
Marachlian E, Klappenbach M, Locatelli F
Cell Tissue Res. 2021 Jan. 383(1):165-175.

Dysregulation of the NRG1/ERBB pathway causes a developmental disorder with gastrointestinal dysmotility in humans.
Le TL, Galmiche L, Levy J, Suwannarat P, Hellebrekers DM, Morarach K, Boismoreau F, Theunissen TE, Lefebvre M, Pelet A, Martinovic J, Gelot A, Guimiot F, Calleroz A, Gitiaux C, Hully M, Goulet O, Chardot C, Drunat S, Capri Y, Bole‑Feysot C, Nitschké P, Whalen S, Mouthon L, Babcock HE, Hofstra R, de Coo IF, Tabet AC, Molina TJ, Keren B, Brooks A, Smeets HJ, Marklund U, Gordon CT, Lyonnet S, Amiel J, Bondurand N
J Clin Invest. 2021 Mar 15. 131(6).

Aggregative cycles evolve as a solution to conflicts in social investment.
Miele L, De Monte S
PLoS Comput Biol. 2021 Jan. 17(1):e1008617.

The Arabidopsis active demethylase ROS1 cis-regulates defence genes by erasing DNA methylation at promoter-regulatory regions.
Halter T, Wang J, Amesefe D, Lastrucci E, Charvin M, Singla Rastogi M, Navarro L
Elife. 2021 Jan 20. 10.

Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function.
Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D
Nat Commun. 2021 Jan 18. 12(1):410.

Polycomb mutant partially suppresses DNA hypomethylation-associated phenotypes in Arabidopsis.
Rougée M, Quadrana L, Zervudacki J, Hure V, Colot V, Navarro L, Deleris A
Life Sci Alliance. 2021 Feb. 4(2).

Large, Stable Spikes Exhibit Differential Broadening in Excitatory and Inhibitory Neocortical Boutons.
Ritzau‑Jost A, Tsintsadze T, Krueger M, Ader J, Bechmann I, Eilers J, Barbour B, Smith SM, Hallermann S
Cell Rep. 2021 Jan 12. 34(2):108612.

Connecting high-throughput biodiversity inventories : Opportunities for a site-based genomic framework for global integration and synthesis.
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Mol Ecol. 2021 Mar. 30(5):1120-1135.

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes.
Dorrell RG, Villain A, Perez‑Lamarque B, Audren de Kerdrel G, McCallum G, Watson AK, Ait‑Mohamed O, Alberti A, Corre E, Frischkorn KR, Pierella Karlusich JJ, Pelletier E, Morlon H, Bowler C, Blanc G
Proc Natl Acad Sci U S A. 2021 Jan 26. 118(4).

The Tumor Microenvironment Impairs Th1 IFNγ Secretion through Alternative Splicing Modifications of Irf1 Pre-mRNA.
Bernard A, Hibos C, Richard C, Viltard E, Chevrier S, Lemoine S, Melin J, Humblin E, Mary R, Accogli T, Chalmin F, Bruchard M, Peixoto P, Hervouet E, Apetoh L, Ghiringhelli F, Végran F, Boidot R
Cancer Immunol Res. 2021 Mar. 9(3):324-336.

Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer.
Cantini L, Zakeri P, Hernandez C, Naldi A, Thieffry D, Remy E, Baudot A
Nat Commun. 2021 Jan 5. 12(1):124.

Mechanism of efficient double-strand break repair by a long non-coding RNA.
Thapar R, Wang JL, Hammel M, Ye R, Liang K, Sun C, Hnizda A, Liang S, Maw SS, Lee L, Villarreal H, Forrester I, Fang S, Tsai MS, Blundell TL, Davis AJ, Lin C, Lees‑Miller SP, Strick TR, Tainer JA
Nucleic Acids Res. 2021 Jan 25. 49(2):1199-1200.

Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species.
Sawka‑Gądek N, Potekhin A, Singh DP, Grevtseva I, Arnaiz O, Penel S, Sperling L, Tarcz S, Duret L, Nekrasova I, Meyer E
Genome Biol Evol. 2021 Feb 3. 13(2).

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo.
Floc'hlay S, Molina MD, Hernandez C, Haillot E, Thomas‑Chollier M, Lepage T, Thieffry D
Development. 2021 Jan 20. 148(2).

One progenitor to generate them all : new evidence for multi-fated neural progenitors.
Ortiz‑Álvarez G, Spassky N
Curr Opin Neurobiol. 2021 Feb. 66:186-194.

Fate restrictions in embryonic neural progenitors.
Fischer E, Morin X
Curr Opin Neurobiol. 2021 Feb. 66:178-185.

Being superficial : a developmental viewpoint on cortical layer 1 wiring.
Genescu I, Garel S
Curr Opin Neurobiol. 2021 Feb. 66:125-134.

Validated MAGIC and GWAS population mapping reveals the link between vitamin E content and natural variation in chorismate metabolism in tomato.
Burgos E, Belen De Luca M, Diouf I, de Haro LA, Albert E, Sauvage C, Tao ZJ, Bermudez L, Asís R, Nesi AN, Matringe M, Bréhélin C, Guiraud T, Ferrand C, Atienza I, Jorly J, Mauxion JP, Baldet P, Fernie AR, Quadrana L, Rothan C, Causse M, Carrari F
Plant J. 2021 Feb. 105(4):907-923.

Sharing and reporting benefits from biodiversity research.
Marden E, Abbott RJ, Austerlitz F, Ortiz‑Barrientos D, Baucom RS, Bongaerts P, Bonin A, Bonneaud C, Browne L, Alex Buerkle C, Caicedo AL, Coltman DW, Cruzan MB, Davison A, DeWoody JA, Dumbrell AJ, Emerson BC, Fountain‑Jones NM, Gillespie R, Giraud T, Hansen MM, Hodgins KA, Heuertz M, Hirase S, Hooper R, Hohenlohe P, Kane NC, Kelley JL, Kinziger AP, McKenzie VJ, Moreau CS, Nazareno AG, Pelletier TA, Pemberton JM, Qu Y, Renaut S, Riginos C, Rodríguez‑Ezpeleta N, Rogers SM, Russell JA, Schoville SD, Shi S, Smith M, Sork VL, Stone GN, Taberlet P, Videvall E, Waits L, Warschefsky E, Wayne RK, Whibley A, Willoughby J, Yoder JB, Zinger L, Sibbett B, Narum S, Rieseberg LH
Mol Ecol. 2021 Mar. 30(5):1103-1107.

New insights into homoeologous copy number variations in the hexaploid wheat genome.
Juery C, Concia L, De Oliveira R, Papon N, Ramírez‑González R, Benhamed M, Uauy C, Choulet F, Paux E
Plant Genome. 2021 Mar. 14(1):e20069.

Trans-synaptic interactions of ionotropic glutamate receptors.
Fossati M, Charrier C
Curr Opin Neurobiol. 2021 Feb. 66:85-92.

Global functional and phylogenetic structure of avian assemblages across elevation and latitude.
Jarzyna MA, Quintero I, Jetz W
Ecol Lett. 2021 Feb. 24(2):196-207.

Type 2 diabetes is associated with impaired jejunal enteroendocrine GLP-1 cell lineage in human obesity.
Osinski C, Le Gléau L, Poitou C, de Toro‑Martin J, Genser L, Fradet M, Soula HA, Leturque A, Blugeon C, Jourdren L, Hubert EL, Clément K, Serradas P, Ribeiro A
Int J Obes (Lond). 2021 Jan. 45(1):170-183.

Frequency of mispackaging of Prochlorococcus DNA by cyanophage.
Laurenceau R, Raho N, Forget M, Arellano AA, Chisholm SW
ISME J. 2021 Jan. 15(1):129-140.

Architecture and function of NMDA receptors : an evolutionary perspective.
Stroebel D, Paoletti P
J Physiol. 2021 May. 599(10):2615-2638.

A comparative pan-genomic analysis of 53 C. pseudotuberculosis strains based on functional domains.
Bernardes JS, Eberle RJ, Vieira FRJ, Coronado MA
J Biomol Struct Dyn. 2021 Nov. 39(18):6974-6986.

Multifaceted activities of the plant SAGA complex.
Grasser KD, Rubio V, Barneche F
Biochim Biophys Acta Gene Regul Mech. 2021 Feb. 1864(2):194613.

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Touré V, Vercruysse S, Acencio ML, Lovering RC, Orchard S, Bradley G, Casals‑Casas C, Chaouiya C, Del‑Toro N, Flobak Å, Gaudet P, Hermjakob H, Hoyt CT, Licata L, Lægreid A, Mungall CJ, Niknejad A, Panni S, Perfetto L, Porras P, Pratt D, Saez‑Rodriguez J, Thieffry D, Thomas PD, Türei D, Kuiper M
Bioinformatics. 2021 Apr 5. 36(24):5712-5718.

Microglia modulate gliotransmission through the regulation of VAMP2 proteins in astrocytes.
Takata‑Tsuji F, Chounlamountri N, Do LD, Philippot C, Novion Ducassou J, Couté Y, Ben Achour S, Honnorat J, Place C, Pascual O
Glia. 2021 Jan. 69(1):61-72.

2020

Laurent Jourdren — 2020-01-06T09:18:12Z

Convergence in the RNA processing of fractured algal organelle genomes.
Dorrell RG
J Phycol. 2020 Oct. 56(5):1121-1123.

Cilia density and flow velocity affect alignment of motile cilia from brain cells.
Pellicciotta N, Das D, Kotar J, Faucourt M, Spassky N, Lauga E, Cicuta P
J Exp Biol. 2020 Dec 29. 223(Pt 24).

Distinctive Cellular and Metabolic Reprogramming in Porcine Lung Mononuclear Phagocytes Infected With Type 1 PRRSV Strains.
Crisci E, Moroldo M, Vu Manh TP, Mohammad A, Jourdren L, Urien C, Bouguyon E, Bordet E, Bevilacqua C, Bourge M, Pezant J, Pléau A, Boulesteix O, Schwartz I, Bertho N, Giuffra E
Front Immunol. 2020. 11:588411.

An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids.
Corral‑Jara KF, Cantini L, Poupin N, Ye T, Rigaudière JP, De Saint Vincent S, Pinel A, Morio B, Capel F
Nutrients. 2020 Dec 17. 12(12).

Reduced Interhemispheric Coherence in Cerebellar Kainic Acid-Induced Lateralized Dystonia.
Georgescu Margarint EL, Georgescu IA, Zahiu CDM, Tirlea SA, Şteopoaie AR, Zǎgrean L, Popa D, Zǎgrean AM
Front Neurol. 2020. 11:580540.

The structure and global distribution of the endoplasmic reticulum network are actively regulated by lysosomes.
Lu M, van Tartwijk FW, Lin JQ, Nijenhuis W, Parutto P, Fantham M, Christensen CN, Avezov E, Holt CE, Tunnacliffe A, Holcman D, Kapitein L, Schierle GSK, Kaminski CF
Sci Adv. 2020 Dec. 6(51).

Cis-acting variation is common across regulatory layers but is often buffered during embryonic development.
Floc'hlay S, Wong E, Zhao B, Viales RR, Thomas‑Chollier M, Thieffry D, Garfield DA, Furlong EEM
Genome Res. 2020 Dec 11.

Diversity hotspots : Coldspots of speciation ?
Morlon H
Science. 2020 Dec 11. 370(6522):1268-1269.

Glucose-lactose mixture feeds in industry-like conditions : a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30.
Pirayre A, Duval L, Blugeon C, Firmo C, Perrin S, Jourdier E, Margeot A, Bidard F
BMC Genomics. 2020 Dec 10. 21(1):885.

Genetic deciphering of the antagonistic activities of the melanin-concentrating hormone and melanocortin pathways in skin pigmentation.
Madelaine R, Ngo KJ, Skariah G, Mourrain P
PLoS Genet. 2020 Dec. 16(12):e1009244.

Does divergence from normal patterns of integration increase as chromosomal fusions increase in number ? A test on a house mouse hybrid zone.
Fruciano C, Colangelo P, Castiglia R, Franchini P
Curr Zool. 2020 Oct. 66(5):527-538.

Dynamical Boolean Modeling of Immunogenic Cell Death.
Checcoli A, Pol JG, Naldi A, Noel V, Barillot E, Kroemer G, Thieffry D, Calzone L, Stoll G
Front Physiol. 2020. 11:590479.

Absent phasing of respiratory and locomotor rhythms in running mice.
Hérent C, Diem S, Fortin G, Bouvier J
Elife. 2020 Dec 1. 9.

Cerebellar Cortex 4-12 Hz Oscillations and Unit Phase Relation in the Awake Rat.
Lévesque M, Gao H, Southward C, Langlois JMP, Léna C, Courtemanche R
Front Syst Neurosci. 2020. 14:475948.

Synchronization, Stochasticity, and Phase Waves in Neuronal Networks With Spatially-Structured Connectivity.
Kulkarni A, Ranft J, Hakim V
Front Comput Neurosci. 2020. 14:569644.

PhaeoNet : A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum.
Ait‑Mohamed O, Novák Vanclová AMG, Joli N, Liang Y, Zhao X, Genovesio A, Tirichine L, Bowler C, Dorrell RG
Front Plant Sci. 2020. 11:590949.

Translational study of the whole transcriptome in rats and genetic polymorphisms in humans identifies LRP1B and VPS13A as key genes involved in tolerance to cocaine-induced motor disturbances.
Vorspan F, Icick R, Mekdad N, Courtin C, Bloch V, Bellivier F, Laplanche JL, Prince N, Pishalin D, Firmo C, Blugeon C, Mégarbane B, Marie‑Claire C, Benturquia N
Transl Psychiatry. 2020 Nov 6. 10(1):381.

Algal plankton turn to hunting to survive and recover from end-Cretaceous impact darkness.
Gibbs SJ, Bown PR, Ward BA, Alvarez SA, Kim H, Archontikis OA, Sauterey B, Poulton AJ, Wilson J, Ridgwell A
Sci Adv. 2020 Oct. 6(44).

Computational Verification of Large Logical Models-Application to the Prediction of T Cell Response to Checkpoint Inhibitors.
Hernandez C, Thomas‑Chollier M, Naldi A, Thieffry D
Front Physiol. 2020. 11:558606.

Unraveling spatial cellular pattern by computational tissue shuffling.
Laruelle E, Spassky N, Genovesio A
Commun Biol. 2020 Oct 23. 3(1):605.

Triangulation Sensing to Determine the Gradient Source from Diffusing Particles to Small Cell Receptors.
Dobramysl U, Holcman D
Phys Rev Lett. 2020 Oct 2. 125(14):148102.

Bidirectional control of fear memories by cerebellar neurons projecting to the ventrolateral periaqueductal grey.
Frontera JL, Baba Aissa H, Sala RW, Mailhes‑Hamon C, Georgescu IA, Léna C, Popa D
Nat Commun. 2020 Oct 15. 11(1):5207.

Fluorescent secreted bacterial effectors reveal active intravacuolar proliferation of Listeria monocytogenes in epithelial cells.
Peron‑Cane C, Fernandez JC, Leblanc J, Wingertsmann L, Gautier A, Desprat N, Lebreton A
PLoS Pathog. 2020 Oct. 16(10):e1009001.

Super-Resolution Microscopy and FIB-SEM Imaging Reveal Parental Centriole-Derived, Hybrid Cilium in Mammalian Multiciliated Cells.
Liu Z, Nguyen QPH, Nanjundappa R, Delgehyr N, Megherbi A, Doherty R, Thompson J, Jackson C, Albulescu A, Heng YM, Lucas JS, Dell SD, Meunier A, Czymmek K, Mahjoub MR, Mennella V
Dev Cell. 2020 Oct 26. 55(2):224-236.e6.

Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response.
Picart‑Picolo A, Grob S, Picault N, Franek M, Llauro C, Halter T, Maier TR, Jobet E, Descombin J, Zhang P, Paramasivan V, Baum TJ, Navarro L, Dvořáčková M, Mirouze M, Pontvianne F
Genome Res. 2020 Nov. 30(11):1583-1592.

Evolution of communication signals and information during species radiation.
Garcia M, Theunissen F, Sèbe F, Clavel J, Ravignani A, Marin‑Cudraz T, Fuchs J, Mathevon N
Nat Commun. 2020 Oct 2. 11(1):4970.

Visualizing the dynamics of exported bacterial proteins with the chemogenetic fluorescent reporter FAST.
Chekli Y, Peron‑Cane C, Dell'Arciprete D, Allemand JF, Li C, Ghigo JM, Gautier A, Lebreton A, Desprat N, Beloin C
Sci Rep. 2020 Sep 25. 10(1):15791.

NCBP3 positively impacts mRNA biogenesis.
Dou Y, Barbosa I, Jiang H, Iasillo C, Molloy KR, Schulze WM, Cusack S, Schmid M, Le Hir H, LaCava J, Jensen TH
Nucleic Acids Res. 2020 Oct 9. 48(18):10413-10427.

A multi-scale eco-evolutionary model of cooperation reveals how microbial adaptation influences soil decomposition.
Abs E, Leman H, Ferrière R
Commun Biol. 2020 Sep 21. 3(1):520.

Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion.
Drareni K, Ballaire R, Alzaid F, Goncalves A, Chollet C, Barilla S, Nguewa JL, Dias K, Lemoine S, Riveline JP, Roussel R, Dalmas E, Velho G, Treuter E, Gautier JF, Venteclef N
Cell Rep. 2020 Sep 15. 32(11):108141.

Ecological Dynamics : Integrating Empirical, Statistical, and Analytical Methods.
Laubmeier AN, Cazelles B, Cuddington K, Erickson KD, Fortin MJ, Ogle K, Wikle CK, Zhu K, Zipkin EF
Trends Ecol Evol. 2020 Dec. 35(12):1090-1099.

Engineering E. coli for Magnetic Control and the Spatial Localization of Functions.
Aubry M, Wang WA, Guyodo Y, Delacou E, Guigner JM, Espeli O, Lebreton A, Guyot F, Gueroui Z
ACS Synth Biol. 2020 Nov 20. 9(11):3030-3041.

JMJD6 Regulates Splicing of Its Own Gene Resulting in Alternatively Spliced Isoforms with Different Nuclear Targets.
Raguz N, Heim A, Engal E, Wesche J, Merl‑Pham J, Hauck SM, Erkelenz S, Schaal H, Bensaude O, Wolf A, Salton M, Böttger A
Int J Mol Sci. 2020 Sep 10. 21(18).

The Anatomical and Functional Heterogeneity of the Mediodorsal Thalamus.
Georgescu IA, Popa D, Zagrean L
Brain Sci. 2020 Sep 9. 10(9).

Reduced Interhemispheric Coherence after Cerebellar Vermis Output Perturbation.
Georgescu Margarint EL, Georgescu IA, Zahiu CD, Șteopoaie AR, Tirlea SA, Popa D, Zagrean AM, Zagrean L
Brain Sci. 2020 Sep 8. 10(9).

Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions.
Endo H, Blanc‑Mathieu R, Li Y, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan MB, Bowler C, Wincker P, Karp‑Boss L, Sunagawa S, Ogata H
Nat Ecol Evol. 2020 Dec. 4(12):1639-1649.

An individual-based model for the eco-evolutionary emergence of bipartite interaction networks.
Maliet O, Loeuille N, Morlon H
Ecol Lett. 2020 Nov. 23(11):1623-1634.

The Salt Sensitivity Induced by Disruption of Cell Wall-Associated Kinase 1 (SlWAK1) Tomato Gene Is Linked to Altered Osmotic and Metabolic Homeostasis.
Meco V, Egea I, Ortíz‑Atienza A, Drevensek S, Esch E, Yuste‑Lisbona FJ, Barneche F, Vriezen W, Bolarin MC, Lozano R, Flores FB
Int J Mol Sci. 2020 Aug 31. 21(17).

A broad mutational target explains a fast rate of phenotypic evolution.
Besnard F, Picao‑Osorio J, Dubois C, Félix MA
Elife. 2020 Aug 27. 9.

Local Translation in Perisynaptic Astrocytic Processes Is Specific and Changes after Fear Conditioning.
Mazaré N, Oudart M, Moulard J, Cheung G, Tortuyaux R, Mailly P, Mazaud D, Bemelmans AP, Boulay AC, Blugeon C, Jourdren L, Le Crom S, Rouach N, Cohen‑Salmon M
Cell Rep. 2020 Aug 25. 32(8):108076.

SBML Level 3 : an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik‑Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier‑Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M
Mol Syst Biol. 2020 Aug. 16(8):e9110.

Poultry farmer response to disease outbreaks in smallholder farming systems in southern Vietnam.
Delabouglise A, Thanh NTL, Xuyen HTA, Nguyen‑Van‑Yen B, Tuyet PN, Lam HM, Boni MF
Elife. 2020 Aug 25. 9.

Global identification of a marine diatom long noncoding natural antisense transcripts (NATs) and their response to phosphate fluctuations.
Cruz de Carvalho MH, Bowler C
Sci Rep. 2020 Aug 24. 10(1):14110.

Microglial ontogeny, diversity and neurodevelopmental functions.
Thion MS, Garel S
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Diversification and hybrid incompatibility in auto-pseudogamous species of Mesorhabditis nematodes.
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Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection.
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The impact of transposable elements on tomato diversity.
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A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting.
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The contribution of transposable elements to transcriptional novelty in plants : the FLC affair.
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Dynamic Functional Connectivity between order and randomness and its evolution across the human adult lifespan.
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The activation trajectory of plasmacytoid dendritic cells in vivo during a viral infection.
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Increased temperature has no consequence for behavioral manipulation despite effects on both partners in the interaction between a crustacean host and a manipulative parasite.
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Dynamic Contrast for Plant Phenotyping.
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Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity.
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Genome wide distribution of G-quadruplexes and their impact on gene expression in malaria parasites.
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Active flow network generates molecular transport by packets : case of the endoplasmic reticulum.
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Coordination of transcriptional and translational regulations in human epithelial cells infected by Listeria monocytogenes.
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IL-12 Signaling Contributes to the Reprogramming of Neonatal CD8⁺ T Cells.
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Conserved Small Nucleotidic Elements at the Origin of Concerted piRNA Biogenesis from Genes and lncRNAs.
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Cells. 2020 Jun 18. 9(6).

A Far-Red Emitting Fluorescent Chemogenetic Reporter for In Vivo Molecular Imaging.
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Direct Readout of Neural Stem Cell Transgenesis with an Integration-Coupled Gene Expression Switch.
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A kinetic analysis of mouse rod and cone photoreceptor responses.
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J Physiol. 2020 Sep. 598(17):3747-3763.

Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications.
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Mol Biol Evol. 2020 Nov 1. 37(11):3324-3337.

Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.
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Model-Based Inference of Punctuated Molecular Evolution.
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Mol Biol Evol. 2020 Nov 1. 37(11):3308-3323.

Interactions among interactions : The dynamical consequences of antagonism between mutualists.
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J Theor Biol. 2020 Sep 21. 501:110334.

Characterizing amplitude and frequency modulation cues in natural soundscapes : A pilot study on four habitats of a biosphere reserve.
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Co-evolution of primitive methane-cycling ecosystems and early Earth's atmosphere and climate.
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Blind deconvolution for spike inference from fluorescence recordings.
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J Neurosci Methods. 2020 Aug 1. 342:108763.

FORK-seq : replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing.
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Genome Biol. 2020 May 26. 21(1):125.

Logical modeling of cell fate specification-Application to T cell commitment.
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Curr Top Dev Biol. 2020. 139:205-238.

Modular Organization of Cis-regulatory Control Information of Neurotransmitter Pathway Genes in Caenorhabditis elegans.
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The Ancestral Caenorhabditis elegans Cuticle Suppresses rol-1.
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G3 (Bethesda). 2020 Jul 7. 10(7):2385-2395.

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Response to technical comment 'A cautionary note for users of linear diversification dependencies'.
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Coherence of dengue incidence and climate in the wet and dry zones of Sri Lanka.
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Sci Total Environ. 2020 Jul 1. 724:138269.

Automated inference of Boolean models from molecular interaction maps using CaSQ.
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Bioinformatics. 2020 Aug 15. 36(16):4473-4482.

Neuronal Function and Dopamine Signaling Evolve at High Temperature in Drosophila.
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Mol Biol Evol. 2020 Sep 1. 37(9):2630-2640.

Synergism of type 1 metabotropic and ionotropic glutamate receptors in cerebellar molecular layer interneurons in vivo.
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Elife. 2020 May 13. 9.

Tara Oceans : towards global ocean ecosystems biology.
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Nat Rev Microbiol. 2020 Aug. 18(8):428-445.

Direct observation of helicase-topoisomerase coupling within reverse gyrase.
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Proc Natl Acad Sci U S A. 2020 May 19. 117(20):10856-10864.

Early correction of synaptic long-term depression improves abnormal anxiety-like behavior in adult GluN2B-C456Y-mutant mice.
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PLoS Biol. 2020 Apr. 18(4):e3000717.

In vivo large-scale analysis of Drosophila neuronal calcium traces by automated tracking of single somata.
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Sci Rep. 2020 Apr 28. 10(1):7153.

Aire-dependent genes undergo Clp1-mediated 3'UTR shortening associated with higher transcript stability in the thymus.
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Structural and functional insights into CWC27/CWC22 heterodimer linking the exon junction complex to spliceosomes.
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Nucleic Acids Res. 2020 Jun 4. 48(10):5670-5683.

Inhibitory synaptic transmission tuned by Ca²⁺ and glutamate through the control of GABA_A R lateral diffusion dynamics.
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Publisher Correction : Genetic tool development in marine protists : emerging model organisms for experimental cell biology.
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Nat Methods. 2020 May. 17(5):551.

Extreme escape from a cusp : When does geometry matter for the fastest Brownian particles moving in crowded cellular environments ?
Basnayake K, Holcman D
J Chem Phys. 2020 Apr 7. 152(13):134104.

Early Fate Defines Microglia and Non-parenchymal Brain Macrophage Development.
Utz SG, See P, Mildenberger W, Thion MS, Silvin A, Lutz M, Ingelfinger F, Rayan NA, Lelios I, Buttgereit A, Asano K, Prabhakar S, Garel S, Becher B, Ginhoux F, Greter M
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Genetic tool development in marine protists : emerging model organisms for experimental cell biology.
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Nat Methods. 2020 May. 17(5):481-494.

Corrigendum : Synaptic Mechanisms Underlying the Network State-Dependent Recruitment of VIP-Expressing Interneurons in the CA1 Hippocampus.
Luo X, Guet‑McCreight A, Villette V, Francavilla R, Marino B, Chamberland S, Skinner FK, Topolnik L
Cereb Cortex. 2020 May 14. 30(5):3437.

Artificially decreasing cortical tension generates aneuploidy in mouse oocytes.
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Nat Commun. 2020 Apr 3. 11(1):1649.

Entrainment of mammalian motile cilia in the brain with hydrodynamic forces.
Pellicciotta N, Hamilton E, Kotar J, Faucourt M, Delgehyr N, Spassky N, Cicuta P
Proc Natl Acad Sci U S A. 2020 Apr 14. 117(15):8315-8325.

Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects.
Van Dooren TJM, Silveira AB, Gilbault E, Jiménez‑Gómez JM, Martin A, Bach L, Tisné S, Quadrana L, Loudet O, Colot V
J Exp Bot. 2020 Jun 22. 71(12):3588-3602.

Dynamics and organization of proteins in the neuronal plasma membrane.
Triller A, Renner M, Choquet D
Neuropharmacology. 2020 Jun 1. 169:108043.

Long-term persistence of monotypic dengue transmission in small size isolated populations, French Polynesia, 1978-2014.
Teissier Y, Paul R, Aubry M, Rodo X, Dommar C, Salje H, Sakuntabhai A, Cazelles B, Cao‑Lormeau VM
PLoS Negl Trop Dis. 2020 Mar. 14(3):e0008110.

Disentangling the assembly mechanisms of ant cuticular bacterial communities of two Amazonian ant species sharing a common arboreal nest.
Birer C, Moreau CS, Tysklind N, Zinger L, Duplais C
Mol Ecol. 2020 Apr. 29(7):1372-1385.

Synaptic Mechanisms Underlying the Network State-Dependent Recruitment of VIP-Expressing Interneurons in the CA1 Hippocampus.
Luo X, Guet‑McCreight A, Villette V, Francavilla R, Marino B, Chamberland S, Skinner FK, Topolnik L
Cereb Cortex. 2020 May 18. 30(6):3667-3685.

Author Correction : Biotic soil-plant interaction processes explain most of hysteretic soil CO₂ efflux response to temperature in cross-factorial mesocosm experiment.
Dusza Y, Sanchez‑Cañete EP, Galliard JL, Ferrière R, Chollet S, Massol F, Hansart A, Juarez S, Dontsova K, Haren JV, Troch P, Pavao‑Zuckerman MA, Hamerlynck E, Barron‑Gafford GA
Sci Rep. 2020 Feb 20. 10(1):3070.

A review of pathogens in selected Baltic Sea indicator species.
Sonne C, Lakemeyer J, Desforges JP, Eulaers I, Persson S, Stokholm I, Galatius A, Gross S, Gonnsen K, Lehnert K, Andersen‑Ranberg EU, Tange Olsen M, Dietz R, Siebert U
Environ Int. 2020 Apr. 137:105565.

Lifetime of a structure evolving by cluster aggregation and particle loss, and application to postsynaptic scaffold domains.
Hakim V, Ranft J
Phys Rev E. 2020 Jan. 101(1-1):012411.

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network.
Zinovyev A, Czerwinska U, Cantini L, Barillot E, Frahm KM, Shepelyansky DL
PLoS Comput Biol. 2020 Feb. 16(2):e1007652.

The signaling peptide PapR is required for the activity of the quorum-sensor PlcRa in Bacillus thuringiensis.
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Reliable Phylogenetic Regressions for Multivariate Comparative Data : Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats.
Clavel J, Morlon H
Syst Biol. 2020 Sep 1. 69(5):927-943.

Differential Membrane Binding and Seeding of Distinct α-Synuclein Fibrillar Polymorphs.
Shrivastava AN, Bousset L, Renner M, Redeker V, Savistchenko J, Triller A, Melki R
Biophys J. 2020 Mar 24. 118(6):1301-1320.

Photocontrol of Metabotropic Glutamate Receptors : When One Agonist Is Not Enough, Make It Two.
Mony L, Paoletti P
Neuron. 2020 Feb 5. 105(3):395-397.

Cheating in arbuscular mycorrhizal mutualism : a network and phylogenetic analysis of mycoheterotrophy.
Perez‑Lamarque B, Selosse MA, Öpik M, Morlon H, Martos F
New Phytol. 2020 Jun. 226(6):1822-1835.

Biotic soil-plant interaction processes explain most of hysteric soil CO₂ efflux response to temperature in cross-factorial mesocosm experiment.
Dusza Y, Sanchez‑Cañete EP, Galliard JL, Ferrière R, Chollet S, Massol F, Hansart A, Juarez S, Dontsova K, Haren JV, Troch P, Pavao‑Zuckerman MA, Hamerlynck E, Barron‑Gafford GA
Sci Rep. 2020 Jan 22. 10(1):905.

Spatiotemporal properties of whisker-evoked tactile responses in the mouse secondary somatosensory cortex.
Hubatz S, Hucher G, Shulz DE, Férézou I
Sci Rep. 2020 Jan 21. 10(1):763.

Enhancer-gene maps in the human and zebrafish genomes using evolutionary linkage conservation.
Clément Y, Torbey P, Gilardi‑Hebenstreit P, Crollius HR
Nucleic Acids Res. 2020 Mar 18. 48(5):2357-2371.

Adaptation of Biotrophic Leaf Pathogens to Fertilization-Mediated Changes in Plant Traits : A Comparison of the Optimization Principle to Invasion Fitness.
Précigout PA, Robert C, Claessen D
Phytopathology. 2020 May. 110(5):1039-1048.

Naturalistic Behavior : The Zebrafish Larva Strikes Back.
Privat M, Sumbre G
Curr Biol. 2020 Jan 6. 30(1):R27-R29.

[Corrigendum to "EEG power spectral density under Propofol and its association with burst suppression, a marker of cerebral fragility" [Clin. Neurophysiol. 130 (2019) 1311-1319].->https://doi.org/10.1016/j.clinph.2019.12.001]
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Clin Neurophysiol. 2020 Mar. 131(3):781.

Interpreting pathways to discover cancer driver genes with Moonlight.
Colaprico A, Olsen C, Bailey MH, Odom GJ, Terkelsen T, Silva TC, Olsen AV, Cantini L, Zinovyev A, Barillot E, Noushmehr H, Bertoli G, Castiglioni I, Cava C, Bontempi G, Chen XS, Papaleo E
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Phytoplankton in the Tara Ocean.
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Ann Rev Mar Sci. 2020 Jan 3. 12:233-265.

From behavior to circuit modeling of light-seeking navigation in zebrafish larvae.
Karpenko S, Wolf S, Lafaye J, Le Goc G, Panier T, Bormuth V, Candelier R, Debrégeas G
Elife. 2020 Jan 2. 9.

PySpacell : A Python Package for Spatial Analysis of Cell Images.
Rose F, Rappez L, Triana SH, Alexandrov T, Genovesio A
Cytometry A. 2020 Mar. 97(3):288-295.

Interdependent Phenotypic and Biogeographic Evolution Driven by Biotic Interactions.
Quintero I, Landis MJ
Syst Biol. 2020 Jul 1. 69(4):739-755.

Increased Confinement and Polydispersity of STIM1 and Orai1 after Ca²⁺ Store Depletion.
Qin X, Liu L, Lee SK, Alsina A, Liu T, Wu C, Park H, Yu C, Kim H, Chu J, Triller A, Tang BZ, Hyeon C, Park CY, Park H
Biophys J. 2020 Jan 7. 118(1):70-84.

Synaptic zinc contributes to motor and cognitive deficits in 6-hydroxydopamine mouse models of Parkinson's disease.
Sikora J, Kieffer BL, Paoletti P, Ouagazzal AM
Neurobiol Dis. 2020 Feb. 134:104681.

Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression.
Beets I, Zhang G, Fenk LA, Chen C, Nelson GM, Félix MA, de Bono M
Neuron. 2020 Jan 8. 105(1):106-121.e10.

TFregulomeR reveals transcription factors' context-specific features and functions.
Lin QXX, Thieffry D, Jha S, Benoukraf T
Nucleic Acids Res. 2020 Jan 24. 48(2):e10.

ParameciumDB 2019 : integrating genomic data across the genus for functional and evolutionary biology.
Arnaiz O, Meyer E, Sperling L
Nucleic Acids Res. 2020 Jan 8. 48(D1):D599-D605.

JASPAR 2020 : update of the open-access database of transcription factor binding profiles.
Fornes O, Castro‑Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, Modi BP, Correard S, Gheorghe M, Baranašić D, Santana‑Garcia W, Tan G, Chèneby J, Ballester B, Parcy F, Sandelin A, Lenhard B, Wasserman WW, Mathelier A
Nucleic Acids Res. 2020 Jan 8. 48(D1):D87-D92.

Only negligible deviations from electroneutrality are expected in dendritic spines.
Barbour B
Nat Rev Neurosci. 2020 Jan. 21(1):53.

Estimating Diversity Through Time Using Molecular Phylogenies : Old and Species-Poor Frog Families are the Remnants of a Diverse Past.
Billaud O, Moen DS, Parsons TL, Morlon H
Syst Biol. 2020 Mar 1. 69(2):363-383.

ANISEED 2019 : 4D exploration of genetic data for an extended range of tunicates.
Dardaillon J, Dauga D, Simion P, Faure E, Onuma TA, DeBiasse MB, Louis A, Nitta KR, Naville M, Besnardeau L, Reeves W, Wang K, Fagotto M, Guéroult‑Bellone M, Fujiwara S, Dumollard R, Veeman M, Volff JN, Roest Crollius H, Douzery E, Ryan JF, Davidson B, Nishida H, Dantec C, Lemaire P
Nucleic Acids Res. 2020 Jan 8. 48(D1):D668-D675.

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA-based census of soil biodiversity from a tropical forest.
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Mol Ecol Resour. 2020 Mar. 20(2):371-386.

A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum.
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ISME J. 2020 Feb. 14(2):347-363.

Does the Latent Period of Leaf Fungal Pathogens Reflect Their Trophic Type ? A Meta-Analysis of Biotrophs, Hemibiotrophs, and Necrotrophs.
Précigout PA, Claessen D, Makowski D, Robert C
Phytopathology. 2020 Feb. 110(2):345-361.

Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum.
Lewitus E, Aristide L, Morlon H
Syst Biol. 2020 Mar 1. 69(2):234-248.

Fractional occupancy of synaptic binding sites and the molecular plasticity of inhibitory synapses.
Specht CG
Neuropharmacology. 2020 Jun 1. 169:107493.

Cell biology and dynamics of Neuronal Na⁺/K⁺-ATPase in health and diseases.
Shrivastava AN, Triller A, Melki R
Neuropharmacology. 2020 Jun 1. 169:107461.

2019

Laurent Jourdren — 2019-01-07T12:41:40Z

Plant Chromatin Catches the Sun.
Bourbousse C, Barneche F, Laloi C
Front Plant Sci. 2019. 10:1728.

Considering the Role of Adaptive Evolution in Models of the Ocean and Climate System.
Ward BA, Collins S, Dutkiewicz S, Gibbs S, Bown P, Ridgwell A, Sauterey B, Wilson JD, Oschlies A
J Adv Model Earth Syst. 2019 Nov. 11(11):3343-3361.

Inhibitory Receptor Diffusion Dynamics.
Maynard SA, Triller A
Front Mol Neurosci. 2019. 12:313.

Activity-dependent death of transient Cajal-Retzius neurons is required for functional cortical wiring.
Riva M, Genescu I, Habermacher C, Orduz D, Ledonne F, Rijli FM, López‑Bendito G, Coppola E, Garel S, Angulo MC, Pierani A
Elife. 2019 Dec 31. 8.

RSAT variation-tools : An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding.
Santana‑Garcia W, Rocha‑Acevedo M, Ramirez‑Navarro L, Mbouamboua Y, Thieffry D, Thomas‑Chollier M, Contreras‑Moreira B, van Helden J, Medina‑Rivera A
Comput Struct Biotechnol J. 2019. 17:1415-1428.

A measure of force.
Strick TR, Yan J
Curr Opin Chem Biol. 2019 Dec. 53:A4-A6.

Relaxed purifying selection in autopolyploids drives transposable element over-accumulation which provides variants for local adaptation.
Baduel P, Quadrana L, Hunter B, Bomblies K, Colot V
Nat Commun. 2019 Dec 20. 10(1):5818.

Intraspecific Diversity in the Cold Stress Response of Transposable Elements in the Diatom Leptocylindrus aporus.
Pargana A, Musacchia F, Sanges R, Russo MT, Ferrante MI, Bowler C, Zingone A
Genes (Basel). 2019 Dec 20. 11(1).

GC content shapes mRNA storage and decay in human cells.
Courel M, Clément Y, Bossevain C, Foretek D, Vidal Cruchez O, Yi Z, Bénard M, Benassy MN, Kress M, Vindry C, Ernoult‑Lange M, Antoniewski C, Morillon A, Brest P, Hubstenberger A, Roest Crollius H, Standart N, Weil D
Elife. 2019 Dec 19. 8.

Contribution of ROS and metabolic status to neonatal and adult CD8+ T cell activation.
Sánchez‑Villanueva JA, Rodríguez‑Jorge O, Ramírez‑Pliego O, Rosas Salgado G, Abou‑Jaoudé W, Hernandez C, Naldi A, Thieffry D, Santana MA
PLoS One. 2019. 14(12):e0226388.

cAMP-EPAC-Dependent Regulation of Gephyrin Phosphorylation and GABA_AR Trapping at Inhibitory Synapses.
Niwa F, Patrizio A, Triller A, Specht CG
iScience. 2019 Dec 20. 22:453-465.

Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.
Villette V, Chavarha M, Dimov IK, Bradley J, Pradhan L, Mathieu B, Evans SW, Chamberland S, Shi D, Yang R, Kim BB, Ayon A, Jalil A, St‑Pierre F, Schnitzer MJ, Bi G, Toth K, Ding J, Dieudonné S, Lin MZ
Cell. 2019 Dec 12. 179(7):1590-1608.e23.

Massive centriole production can occur in the absence of deuterosomes in multiciliated cells.
Mercey O, Levine MS, LoMastro GM, Rostaing P, Brotslaw E, Gomez V, Kumar A, Spassky N, Mitchell BJ, Meunier A, Holland AJ
Nat Cell Biol. 2019 Dec. 21(12):1544-1552.

An RNA-Binding Protein Secreted by a Bacterial Pathogen Modulates RIG-I Signaling.
Pagliuso A, Tham TN, Allemand E, Robertin S, Dupuy B, Bertrand Q, Bécavin C, Koutero M, Najburg V, Nahori MA, Tangy F, Stavru F, Bessonov S, Dessen A, Muchardt C, Lebreton A, Komarova AV, Cossart P
Cell Host Microbe. 2019 Dec 11. 26(6):823-835.e11.

Molecular scaffolds : when DNA becomes the hardware for single-molecule investigations.
Gosse C, Strick TR, Kostrz D
Curr Opin Chem Biol. 2019 Dec. 53:192-203.

Global Trends in Marine Plankton Diversity across Kingdoms of Life.
Ibarbalz FM, Henry N, Brandão MC, Martini S, Busseni G, Byrne H, Coelho LP, Endo H, Gasol JM, Gregory AC, Mahé F, Rigonato J, Royo‑Llonch M, Salazar G, Sanz‑Sáez I, Scalco E, Soviadan D, Zayed AA, Zingone A, Labadie K, Ferland J, Marec C, Kandels S, Picheral M, Dimier C, Poulain J, Pisarev S, Carmichael M, Pesant S, Babin M, Boss E, Iudicone D, Jaillon O, Acinas SG, Ogata H, Pelletier E, Stemmann L, Sullivan MB, Sunagawa S, Bopp L, de Vargas C, Karp‑Boss L, Wincker P, Lombard F, Bowler C, Zinger L
Cell. 2019 Nov 14. 179(5):1084-1097.e21.

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome.
Salazar G, Paoli L, Alberti A, Huerta‑Cepas J, Ruscheweyh HJ, Cuenca M, Field CM, Coelho LP, Cruaud C, Engelen S, Gregory AC, Labadie K, Marec C, Pelletier E, Royo‑Llonch M, Roux S, Sánchez P, Uehara H, Zayed AA, Zeller G, Carmichael M, Dimier C, Ferland J, Kandels S, Picheral M, Pisarev S, Poulain J, Acinas SG, Babin M, Bork P, Bowler C, de Vargas C, Guidi L, Hingamp P, Iudicone D, Karp‑Boss L, Karsenti E, Ogata H, Pesant S, Speich S, Sullivan MB, Wincker P, Sunagawa S
Cell. 2019 Nov 14. 179(5):1068-1083.e21.

The Crohn's disease-associated Escherichia coli strain LF82 relies on SOS and stringent responses to survive, multiply and tolerate antibiotics within macrophages.
Demarre G, Prudent V, Schenk H, Rousseau E, Bringer MA, Barnich N, Tran Van Nhieu G, Rimsky S, De Monte S, Espéli O
PLoS Pathog. 2019 Nov. 15(11):e1008123.

Sensorimotor Transformations in the Zebrafish Auditory System.
Privat M, Romano SA, Pietri T, Jouary A, Boulanger‑Weill J, Elbaz N, Duchemin A, Soares D, Sumbre G
Curr Biol. 2019 Dec 2. 29(23):4010-4023.e4.

Trans-Synaptic Signaling through the Glutamate Receptor Delta-1 Mediates Inhibitory Synapse Formation in Cortical Pyramidal Neurons.
Fossati M, Assendorp N, Gemin O, Colasse S, Dingli F, Arras G, Loew D, Charrier C
Neuron. 2019 Dec 18. 104(6):1081-1094.e7.

Electrodiffusion Theory to Map the Voltage Distribution in Dendritic Spines at a Nanometer Scale.
Cartailler J, Holcman D
Neuron. 2019 Nov 6. 104(3):440-441.

No Extraction of Spine Neck Resistance from Underdetermined Equations.
Barbour B
Neuron. 2019 Nov 6. 104(3):438-439.

Investigating the epi-miRNome : identification of epi-miRNAs using transfection experiments.
Reale E, Taverna D, Cantini L, Martignetti L, Osella M, De Pittà C, Virga F, Orso F, Caselle M
Epigenomics. 2019 Nov. 11(14):1581-1599.

Electrical Stimulation in the Claustrum Area Induces a Deepening of Isoflurane Anesthesia in Rat.
Pavel B, Menardy F, Rotaru D, Paslaru AC, Acatrinei C, Zagrean L, Popa D, Zagrean AM
Brain Sci. 2019 Nov 1. 9(11).

Sparse force-bearing bridges between neighboring synaptic vesicles.
Wesseling JF, Phan S, Bushong EA, Siksou L, Marty S, Pérez‑Otaño I, Ellisman M
Brain Struct Funct. 2019 Dec. 224(9):3263-3276.

Altered trophic interactions in warming climates : consequences for predator diet breadth and fitness.
Bestion E, Soriano‑Redondo A, Cucherousset J, Jacob S, White J, Zinger L, Fourtune L, Di Gesu L, Teyssier A, Cote J
Proc Biol Sci. 2019 Nov 6. 286(1914):20192227.

Access to RNA-sequencing data from 1,173 plant species : The 1000 Plant transcriptomes initiative (1KP).
Carpenter EJ, Matasci N, Ayyampalayam S, Wu S, Sun J, Yu J, Jimenez Vieira FR, Bowler C, Dorrell RG, Gitzendanner MA, Li L, Du W, K Ullrich K, Wickett NJ, Barkmann TJ, Barker MS, Leebens‑Mack JH, Wong GK
Gigascience. 2019 Oct 1. 8(10).

Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes.
Almonacid M, Al Jord A, El‑Hayek S, Othmani A, Coulpier F, Lemoine S, Miyamoto K, Grosse R, Klein C, Piolot T, Mailly P, Voituriez R, Genovesio A, Verlhac MH
Dev Cell. 2019 Oct 21. 51(2):145-157.e10.

Control of aversion by glycine-gated GluN1/GluN3A NMDA receptors in the adult medial habenula.
Otsu Y, Darcq E, Pietrajtis K, Mátyás F, Schwartz E, Bessaih T, Abi Gerges S, Rousseau CV, Grand T, Dieudonné S, Paoletti P, Acsády L, Agulhon C, Kieffer BL, Diana MA
Science. 2019 Oct 11. 366(6462):250-254.

The unstructured linker arms of MutL enable GATC site incision beyond roadblocks during initiation of DNA mismatch repair.
Mardenborough YSN, Nitsenko K, Laffeber C, Duboc C, Sahin E, Quessada‑Vial A, Winterwerp HHK, Sixma TK, Kanaar R, Friedhoff P, Strick TR, Lebbink JHG
Nucleic Acids Res. 2019 Dec 16. 47(22):11667-11680.

HEXIM1 Diffusion in the Nucleus Is Regulated by Its Interactions with Both 7SK and P-TEFb.
Furlan A, Gonzalez‑Pisfil M, Leray A, Champelovier D, Henry M, Le Nézet C, Bensaude O, Lefranc M, Wohland T, Vandenbunder B, Bidaux G, Héliot L
Biophys J. 2019 Nov 5. 117(9):1615-1625.

A Quantitative Multivariate Model of Human Dendritic Cell-T Helper Cell Communication.
Grandclaudon M, Perrot‑Dockès M, Trichot C, Karpf L, Abouzid O, Chauvin C, Sirven P, Abou‑Jaoudé W, Berger F, Hupé P, Thieffry D, Sansonnet L, Chiquet J, Lévy‑Leduc C, Soumelis V
Cell. 2019 Oct 3. 179(2):432-447.e21.

Does toe clipping for genotyping interfere with later-in-life nociception in mice ?
Frezel N, Kratzer G, Verzar P, Bürki J, Weber FA, Zeilhofer HU
Pain Rep. 2019 May-Jun. 4(3):e740.

Taste bud formation depends on taste nerves.
Fan D, Chettouh Z, Consalez GG, Brunet JF
Elife. 2019 Oct 1. 8.

A modular DNA scaffold to study protein-protein interactions at single-molecule resolution.
Kostrz D, Wayment‑Steele HK, Wang JL, Follenfant M, Pande VS, Strick TR, Gosse C
Nat Nanotechnol. 2019 Oct. 14(10):988-993.

Selection and gene flow shape niche-associated variation in pheromone response.
Lee D, Zdraljevic S, Cook DE, Frézal L, Hsu JC, Sterken MG, Riksen JAG, Wang J, Kammenga JE, Braendle C, Félix MA, Schroeder FC, Andersen EC
Nat Ecol Evol. 2019 Oct. 3(10):1455-1463.

Intrinsic and extrinsic drivers of transmission dynamics of hemorrhagic fever with renal syndrome caused by Seoul hantavirus.
Li Y, Cazelles B, Yang G, Laine M, Huang ZXY, Cai J, Tan H, Stenseth NC, Tian H
PLoS Negl Trop Dis. 2019 Sep. 13(9):e0007757.

The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean.
Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Bourdin G, Bowler C, Douville E, Flores JM, Forcioli D, Furla P, Galand PE, Ghiglione JF, Gilson E, Lombard F, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sullivan MB, Sunagawa S, Thomas OP, Troublé R, de Vargas C, Vega Thurber R, Voolstra CR, Wincker P, Zoccola D
PLoS Biol. 2019 Sep. 17(9):e3000483.

Molecular characterisation of a cellular conveyor belt in Clytia medusae.
Condamine T, Jager M, Leclère L, Blugeon C, Lemoine S, Copley RR, Manuel M
Dev Biol. 2019 Dec 15. 456(2):212-225.

Alpha rhythm collapse predicts iso-electric suppressions during anesthesia.
Cartailler J, Parutto P, Touchard C, Vallée F, Holcman D
Commun Biol. 2019. 2:327.

Understanding the effect of competition during evolutionary radiations : an integrated model of phenotypic and species diversification.
Aristide L, Morlon H
Ecol Lett. 2019 Dec. 22(12):2006-2017.

Dynamics of centriole amplification in centrosome-depleted brain multiciliated progenitors.
Mercey O, Al Jord A, Rostaing P, Mahuzier A, Fortoul A, Boudjema AR, Faucourt M, Spassky N, Meunier A
Sci Rep. 2019 Sep 10. 9(1):13060.

Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets.
Sompairac N, Nazarov PV, Czerwinska U, Cantini L, Biton A, Molkenov A, Zhumadilov Z, Barillot E, Radvanyi F, Gorban A, Kairov U, Zinovyev A
Int J Mol Sci. 2019 Sep 7. 20(18).

Competition for resources may reinforce the evolution of altruism in spatially structured populations.
Baalen MV, Yamauchi A
Math Biosci Eng. 2019 Apr 26. 16(5):3694-3717.

Assessing the causes of diversification slowdowns : temperature-dependent and diversity-dependent models receive equivalent support.
Condamine FL, Rolland J, Morlon H
Ecol Lett. 2019 Nov. 22(11):1900-1912.

Network Reconstruction and Significant Pathway Extraction Using Phosphoproteomic Data from Cancer Cells.
Buffard M, Naldi A, Radulescu O, Coopman PJ, Larive RM, Freiss G
Proteomics. 2019 Nov. 19(21-22):e1800450.

How differing modes of non-genetic inheritance affect population viability in fluctuating environments.
Proulx SR, Dey S, Guzella T, Teotónio H
Ecol Lett. 2019 Nov. 22(11):1767-1775.

Noda-Like RNA Viruses Infecting Caenorhabditis Nematodes : Sympatry, Diversity, and Reassortment.
Frézal L, Jung H, Tahan S, Wang D, Félix MA
J Virol. 2019 Nov 1. 93(21).

Natural Viruses of Caenorhabditis Nematodes.
Félix MA, Wang D
Annu Rev Genet. 2019 Dec 3. 53:313-326.

Unravelling the genes forming the wing pattern supergene in the polymorphic butterfly Heliconius numata.
Saenko SV, Chouteau M, Piron‑Prunier F, Blugeon C, Joron M, Llaurens V
Evodevo. 2019. 10:16.

MicroRNA gene regulation in extremely young and parallel adaptive radiations of crater lake cichlid fish.
Franchini P, Xiong P, Fruciano C, Schneider RF, Woltering JM, Hulsey CD, Meyer A
Mol Biol Evol. 2019 Aug 9.

Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis.
Rutowicz K, Lirski M, Mermaz B, Teano G, Schubert J, Mestiri I, Kroteń MA, Fabrice TN, Fritz S, Grob S, Ringli C, Cherkezyan L, Barneche F, Jerzmanowski A, Baroux C
Genome Biol. 2019 Aug 7. 20(1):157.

Optical control of protein activity and gene expression by photoactivation of caged cyclofen.
Hamouri F, Zhang W, Aujard I, Le Saux T, Ducos B, Vriz S, Jullien L, Bensimon D
Methods Enzymol. 2019. 624:1-23.

Transposition favors the generation of large effect mutations that may facilitate rapid adaption.
Quadrana L, Etcheverry M, Gilly A, Caillieux E, Madoui MA, Guy J, Bortolini Silveira A, Engelen S, Baillet V, Wincker P, Aury JM, Colot V
Nat Commun. 2019 Jul 31. 10(1):3421.

Metabolic Innovations Underpinning the Origin and Diversification of the Diatom Chloroplast.
Nonoyama T, Kazamia E, Nawaly H, Gao X, Tsuji Y, Matsuda Y, Bowler C, Tanaka T, Dorrell RG
Biomolecules. 2019 Jul 30. 9(8).

Biphasic Impact of Prenatal Inflammation and Macrophage Depletion on the Wiring of Neocortical Inhibitory Circuits.
Thion MS, Mosser CA, Férézou I, Grisel P, Baptista S, Low D, Ginhoux F, Garel S, Audinat E
Cell Rep. 2019 Jul 30. 28(5):1119-1126.e4.

The relative importance of ecological drivers of arbuscular mycorrhizal fungal distribution varies with taxon phylogenetic resolution.
Roy J, Mazel F, Sosa‑Hernández MA, Dueñas JF, Hempel S, Zinger L, Rillig MC
New Phytol. 2019 Oct. 224(2):936-948.

GemC1 is a critical switch for neural stem cell generation in the postnatal brain.
Lalioti ME, Kaplani K, Lokka G, Georgomanolis T, Kyrousi C, Dong W, Dunbar A, Parlapani E, Damianidou E, Spassky N, Kahle KT, Papantonis A, Lygerou Z, Taraviras S
Glia. 2019 Dec. 67(12):2360-2373.

m⁵C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants.
Yang L, Perrera V, Saplaoura E, Apelt F, Bahin M, Kramdi A, Olas J, Mueller‑Roeber B, Sokolowska E, Zhang W, Li R, Pitzalis N, Heinlein M, Zhang S, Genovesio A, Colot V, Kragler F
Curr Biol. 2019 Aug 5. 29(15):2465-2476.e5.

Characterizing symbiont inheritance during host-microbiota evolution : Application to the great apes gut microbiota.
Perez‑Lamarque B, Morlon H
Mol Ecol Resour. 2019 Nov. 19(6):1659-1671.

Phaeodactylum tricornutum.
Bowler C, Falciatore A
Trends Genet. 2019 Sep. 35(9):706-707.

Subsynaptic Domains in Super-Resolution Microscopy : The Treachery of Images.
Yang X, Specht CG
Front Mol Neurosci. 2019. 12:161.

Neural signatures of sleep in zebrafish.
Leung LC, Wang GX, Madelaine R, Skariah G, Kawakami K, Deisseroth K, Urban AE, Mourrain P
Nature. 2019 Jul. 571(7764):198-204.

Optical control of neuronal ion channels and receptors.
Paoletti P, Ellis‑Davies GCR, Mourot A
Nat Rev Neurosci. 2019 Sep. 20(9):514-532.

Loss of a Fragile Chromosome Region leads to the Screwy Phenotype in Paramecium tetraurelia.
Nekrasova I, Nikitashina V, Bhullar S, Arnaiz O, Singh DP, Meyer E, Potekhin A
Genes (Basel). 2019 Jul 6. 10(7).

Partial Selfing Can Reduce Genetic Loads While Maintaining Diversity During Experimental Evolution.
Chelo IM, Afonso B, Carvalho S, Theologidis I, Goy C, Pino‑Querido A, Proulx SR, Teotónio H
G3 (Bethesda). 2019 Sep 4. 9(9):2811-2821.

Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes.
Busseni G, Vieira FRJ, Amato A, Pelletier E, Pierella Karlusich JJ, Ferrante MI, Wincker P, Rogato A, Bowler C, Sanges R, Maiorano L, Chiurazzi M, d'Alcalà MR, Caputi L, Iudicone D
Mol Biol Evol. 2019 Jul 1.

Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer : New Insights from Matrix Factorization.
Greco A, Sanchez Valle J, Pancaldi V, Baudot A, Barillot E, Caselle M, Valencia A, Zinovyev A, Cantini L
Int J Mol Sci. 2019 Jun 26. 20(13).

Where and what ? Frugivory is associated with more efficient foraging in three semi-free ranging primate species.
Trapanese C, Robira B, Tonachella G, di Gristina S, Meunier H, Masi S
R Soc Open Sci. 2019 May. 6(5):181722.

Sleep : DNA Repair Function for Better Neuronal Aging ?
Mourrain P, Wang GX
Curr Biol. 2019 Jun 17. 29(12):R585-R588.

Poultry population dynamics and mortality risks in smallholder farms of the Mekong river delta region.
Delabouglise A, Nguyen‑Van‑Yen B, Thanh NTL, Xuyen HTA, Tuyet PN, Lam HM, Boni MF
BMC Vet Res. 2019 Jun 17. 15(1):205.

EEG power spectral density under Propofol and its association with burst suppression, a marker of cerebral fragility.
Touchard C, Cartailler J, Levé C, Parutto P, Buxin C, Garnot L, Matéo J, Kubis N, Mebazaa A, Gayat E, Vallée F
Clin Neurophysiol. 2019 Aug. 130(8):1311-1319.

Spatiotemporal structure of cell fate decisions in murine neural crest.
Soldatov R, Kaucka M, Kastriti ME, Petersen J, Chontorotzea T, Englmaier L, Akkuratova N, Yang Y, Häring M, Dyachuk V, Bock C, Farlik M, Piacentino ML, Boismoreau F, Hilscher MM, Yokota C, Qian X, Nilsson M, Bronner ME, Croci L, Hsiao WY, Guertin DA, Brunet JF, Consalez GG, Ernfors P, Fried K, Kharchenko PV, Adameyko I
Science. 2019 Jun 7. 364(6444).

Fast calcium transients in dendritic spines driven by extreme statistics.
Basnayake K, Mazaud D, Bemelmans A, Rouach N, Korkotian E, Holcman D
PLoS Biol. 2019 Jun. 17(6):e2006202.

A model with many small shifts for estimating species-specific diversification rates.
Maliet O, Hartig F, Morlon H
Nat Ecol Evol. 2019 Jul. 3(7):1086-1092.

Accounting for ocean connectivity and hydroclimate in fish recruitment fluctuations within transboundary metapopulations.
Hidalgo M, Rossi V, Monroy P, Ser‑Giacomi E, Hernández‑García E, Guijarro B, Massutí E, Alemany F, Jadaud A, Perez JL, Reglero P
Ecol Appl. 2019 Jul. 29(5):e01913.

Divergent Allometric Trajectories in Gene Expression and Coexpression Produce Species Differences in Sympatrically Speciating Midas Cichlid Fish.
Fruciano C, Meyer A, Franchini P
Genome Biol Evol. 2019 Jun 1. 11(6):1644-1657.

Author Correction : The new nanophysiology : regulation of ionic flow in neuronal subcompartments.
Holcman D, Yuste R
Nat Rev Neurosci. 2019 Aug. 20(8):509.

Publisher Correction : The new nanophysiology : regulation of ionic flow in neuronal subcompartments.
Holcman D, Yuste R
Nat Rev Neurosci. 2019 Aug. 20(8):510.

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination.
Fiorucci AS, Bourbousse C, Concia L, Rougée M, Deton‑Cabanillas AF, Zabulon G, Layat E, Latrasse D, Kim SK, Chaumont N, Lombard B, Stroebel D, Lemoine S, Mohammad A, Blugeon C, Loew D, Bailly C, Bowler C, Benhamed M, Barneche F
Genome Biol. 2019 May 21. 20(1):100.

Transient Confinement of Ca_V2.1 Ca²⁺-Channel Splice Variants Shapes Synaptic Short-Term Plasticity.
Heck J, Parutto P, Ciuraszkiewicz A, Bikbaev A, Freund R, Mitlöhner J, Andres‑Alonso M, Fejtova A, Holcman D, Heine M
Neuron. 2019 Jul 3. 103(1):66-79.e12.

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria.
Philippe H, Poustka AJ, Chiodin M, Hoff KJ, Dessimoz C, Tomiczek B, Schiffer PH, Müller S, Domman D, Horn M, Kuhl H, Timmermann B, Satoh N, Hikosaka‑Katayama T, Nakano H, Rowe ML, Elphick MR, Thomas‑Chollier M, Hankeln T, Mertes F, Wallberg A, Rast JP, Copley RR, Martinez P, Telford MJ
Curr Biol. 2019 Jun 3. 29(11):1818-1826.e6.

Proteomic Bioprofiles and Mechanistic Pathways of Progression to Heart Failure.
Ferreira JP, Verdonschot J, Collier T, Wang P, Pizard A, Bär C, Björkman J, Boccanelli A, Butler J, Clark A, Cleland JG, Delles C, Diez J, Girerd N, González A, Hazebroek M, Huby AC, Jukema W, Latini R, Leenders J, Levy D, Mebazaa A, Mischak H, Pinet F, Rossignol P, Sattar N, Sever P, Staessen JA, Thum T, Vodovar N, Zhang ZY, Heymans S, Zannad F
Circ Heart Fail. 2019 May. 12(5):e005897.

Detecting dynamic spatial correlation patterns with generalized wavelet coherence and non-stationary surrogate data.
Chavez M, Cazelles B
Sci Rep. 2019 May 14. 9(1):7389.

Tridimensional mapping of Phox2b expressing neurons in the brainstem of adult Macaca fascicularis and identification of the retrotrapezoid nucleus.
Levy J, Facchinetti P, Jan C, Achour M, Bouvier C, Brunet JF, Delzescaux T, Giuliano F
J Comp Neurol. 2019 Dec 1. 527(17):2875-2884.

Functional Integration of Newborn Neurons in the Zebrafish Optic Tectum.
Boulanger‑Weill J, Sumbre G
Front Cell Dev Biol. 2019. 7:57.

Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation.
Sena E, Rocques N, Borday C, Muhamad Amin HS, Parain K, Sitbon D, Chesneau A, Durand BC
Development. 2019 May 22. 146(10).

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.
Zinger L, Bonin A, Alsos IG, Bálint M, Bik H, Boyer F, Chariton AA, Creer S, Coissac E, Deagle BE, De Barba M, Dickie IA, Dumbrell AJ, Ficetola GF, Fierer N, Fumagalli L, Gilbert MTP, Jarman S, Jumpponen A, Kauserud H, Orlando L, Pansu J, Pawlowski J, Tedersoo L, Thomsen PF, Willerslev E, Taberlet P
Mol Ecol. 2019 Apr. 28(8):1857-1862.

One-locus-several-primers : A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies.
Corse E, Tougard C, Archambaud‑Suard G, Agnèse JF, Messu Mandeng FD, Bilong Bilong CF, Duneau D, Zinger L, Chappaz R, Xu CCY, Meglécz E, Dubut V
Ecol Evol. 2019 Apr. 9(8):4603-4620.

Marine DNA Viral Macro- and Microdiversity from Pole to Pole.
Gregory AC, Zayed AA, Conceição‑Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez‑Huerta G, Ferland J, Kandels S, Liu Y, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay JÉ, Vik D, Babin M, Bowler C, Culley AI, de Vargas C, Dutilh BE, Iudicone D, Karp‑Boss L, Roux S, Sunagawa S, Wincker P, Sullivan MB
Cell. 2019 May 16. 177(5):1109-1123.e14.

Neuronal Dynamics Regulating Brain and Behavioral State Transitions.
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Prologue to the special issue of JTB dedicated to the memory of René Thomas (1928-2017) : A journey through biological circuits, logical puzzles and complex dynamics.
Thieffry D, Kaufman M
J Theor Biol. 2019 Aug 7. 474:42-47.

Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling.
Garcia‑Diaz B, Bachelin C, Coulpier F, Gerschenfeld G, Deboux C, Zujovic V, Charnay P, Topilko P, Baron‑Van Evercooren A
Acta Neuropathol. 2019 Sep. 138(3):457-476.

Comparative genomics of 10 new Caenorhabditis species.
Stevens L, Félix MA, Beltran T, Braendle C, Caurcel C, Fausett S, Fitch D, Frézal L, Gosse C, Kaur T, Kiontke K, Newton MD, Noble LM, Richaud A, Rockman MV, Sudhaus W, Blaxter M
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Opposite T₃ Response of ACTG1-FOS Subnetwork Differentiate Tailfin Fate in Xenopus Tadpole and Post-hatching Axolotl.
Kerdivel G, Blugeon C, Fund C, Rigolet M, Sachs LM, Buisine N
Front Endocrinol (Lausanne). 2019. 10:194.

Mechanistic characterization of the DEAD-box RNA helicase Ded1 from yeast as revealed by a novel technique using single-molecule magnetic tweezers.
Raj S, Bagchi D, Orero JV, Banroques J, Tanner NK, Croquette V
Nucleic Acids Res. 2019 Apr 23. 47(7):3699-3710.

Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4⁺ T cell activation.
Rodríguez‑Jorge O, Kempis‑Calanis LA, Abou‑Jaoudé W, Gutiérrez‑Reyna DY, Hernandez C, Ramirez‑Pliego O, Thomas‑Chollier M, Spicuglia S, Santana MA, Thieffry D
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Cranial and endocranial diversity in extant and fossil atelids (Platyrrhini : Atelidae) : A geometric morphometric study.
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Am J Phys Anthropol. 2019 Jun. 169(2):322-331.

Dissection of Local Ca2+ Signals in Cultured Cells by Membrane-targeted Ca2+ Indicators.
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Nat Commun. 2019 Apr 5. 10(1):1560.

Single-molecule characterization of extrinsic transcription termination by Sen1 helicase.
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Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice.
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Mol Neurobiol. 2019 Oct. 56(10):6928-6940.

Assessing reproducibility of matrix factorization methods in independent transcriptomes.
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Bioinformatics. 2019 Nov 1. 35(21):4307-4313.

PICH and TOP3A cooperate to induce positive DNA supercoiling.
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Nat Struct Mol Biol. 2019 Apr. 26(4):267-274.

Mapping and characterization of G-quadruplexes in the genome of the social amoeba Dictyostelium discoideum.
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Nucleic Acids Res. 2019 May 21. 47(9):4363-4374.

ALFA : annotation landscape for aligned reads.
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BMC Genomics. 2019 Mar 29. 20(1):250.

Motile ciliogenesis and the mitotic prism.
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Biol Cell. 2019 Aug. 111(8):199-212.

Aedes mosquitoes acquire and transmit Zika virus by breeding in contaminated aquatic environments.
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Local adaptation, dispersal evolution, and the spatial eco-evolutionary dynamics of invasion.
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Males as somatic investment in a parthenogenetic nematode.
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Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes.
Dorrell RG, Azuma T, Nomura M, Audren de Kerdrel G, Paoli L, Yang S, Bowler C, Ishii KI, Miyashita H, Gile GH, Kamikawa R
Proc Natl Acad Sci U S A. 2019 Apr 2. 116(14):6914-6923.

Ribosome Provisioning Activates a Bistable Switch Coupled to Fast Exit from Stationary Phase.
Remigi P, Ferguson GC, McConnell E, De Monte S, Rogers DW, Rainey PB
Mol Biol Evol. 2019 May 1. 36(5):1056-1070.

Adult Neural Stem Cells and Multiciliated Ependymal Cells Share a Common Lineage Regulated by the Geminin Family Members.
Ortiz‑Álvarez G, Daclin M, Shihavuddin A, Lansade P, Fortoul A, Faucourt M, Clavreul S, Lalioti ME, Taraviras S, Hippenmeyer S, Livet J, Meunier A, Genovesio A, Spassky N
Neuron. 2019 Apr 3. 102(1):159-172.e7.

The golden death bacillus Chryseobacterium nematophagum is a novel matrix digesting pathogen of nematodes.
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BMC Biol. 2019 Feb 28. 17(1):10.

Teleconnection between phytoplankton dynamics in north temperate lakes and global climatic oscillation by time-frequency analysis.
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Corrigendum : A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO₂ in the Model Diatom Phaeodactylum tricornutum.
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Front Microbiol. 2019. 10:158.

Lipid markers and related transcripts during excitotoxic neurodegeneration in kainate-treated mice.
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A Dynamic Signaling Path to Chromatin-Level Control of Plant Drought Response.
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Mol Plant. 2019 Mar 4. 12(3):292-294.

Comparison of stochastic and deterministic frameworks in dengue modelling.
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Math Biosci. 2019 Apr. 310:1-12.

Functional Alteration of Cerebello-Cerebral Coupling in an Experimental Mouse Model of Parkinson's Disease.
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Cereb Cortex. 2019 Apr 1. 29(4):1752-1766.

Necessity and Contingency in Developmental Genetic Screens : EGF, Wnt, and Semaphorin Pathways in Vulval Induction of the Nematode Oscheius tipulae.
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Genetics. 2019 Apr. 211(4):1315-1330.

Exon junction complex components Y14 and Mago still play a role in budding yeast.
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Sci Rep. 2019 Jan 29. 9(1):849.

Atoh1 Controls Primary Cilia Formation to Allow for SHH-Triggered Granule Neuron Progenitor Proliferation.
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Dev Cell. 2019 Jan 28. 48(2):184-199.e5.

Evolution of the Drosophila melanogaster Chromatin Landscape and Its Associated Proteins.
Parey E, Crombach A
Genome Biol Evol. 2019 Mar 1. 11(3):660-677.

Hope4Genes : a Hopfield-like class prediction algorithm for transcriptomic data.
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Sci Rep. 2019 Jan 23. 9(1):337.

Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection.
Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A
Sci Rep. 2019 Jan 18. 9(1):213.

On logical bifurcation diagrams.
Abou‑Jaoudé W, Monteiro PT
J Theor Biol. 2019 Apr 7. 466:39-63.

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer.
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Nucleic Acids Res. 2019 Mar 18. 47(5):2205-2215.

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France.
Geslain G, Birgy A, Adiba S, Magnan M, Courroux C, Levy C, Cohen R, Bidet P, Bonacorsi S
BMC Microbiol. 2019 Jan 17. 19(1):17.

Guidelines for DNA recombination and repair studies : Mechanistic assays of DNA repair processes.
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Microb Cell. 2019 Jan 7. 6(1):65-101.

Clustering of Tau fibrils impairs the synaptic composition of α3-Na⁺/K⁺-ATPase and AMPA receptors.
Shrivastava AN, Redeker V, Pieri L, Bousset L, Renner M, Madiona K, Mailhes‑Hamon C, Coens A, Buée L, Hantraye P, Triller A, Melki R
EMBO J. 2019 Feb 1. 38(3).

Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis.
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Elife. 2019 Jan 4. 8.

Transcription-dependent regulation of replication dynamics modulates genome stability.
Blin M, Le Tallec B, Nähse V, Schmidt M, Brossas C, Millot GA, Prioleau MN, Debatisse M
Nat Struct Mol Biol. 2019 Jan. 26(1):58-66.

Ca²⁺-activated Cl^- current ensures robust and reliable signal amplification in vertebrate olfactory receptor neurons.
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Proc Natl Acad Sci U S A. 2019 Jan 15. 116(3):1053-1058.

The Latitudinal Diversity Gradient : Novel Understanding through Mechanistic Eco-evolutionary Models.
Pontarp M, Bunnefeld L, Cabral JS, Etienne RS, Fritz SA, Gillespie R, Graham CH, Hagen O, Hartig F, Huang S, Jansson R, Maliet O, Münkemüller T, Pellissier L, Rangel TF, Storch D, Wiegand T, Hurlbert AH
Trends Ecol Evol. 2019 Mar. 34(3):211-223.

The Species Problem from the Modeler's Point of View.
Manceau M, Lambert A
Bull Math Biol. 2019 Mar. 81(3):878-898.

Adaptation of Proteins to the Cold in Antarctic Fish : A Role for Methionine ?
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Genome Biol Evol. 2019 Jan 1. 11(1):220-231.

G4HunterApps.
Lacroix L
Bioinformatics. 2019 Jul 1. 35(13):2311-2312.

An inter-dimer allosteric switch controls NMDA receptor activity.
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EMBO J. 2019 Jan 15. 38(2).

Quantitative resistance to clubroot infection mediated by transgenerational epigenetic variation in Arabidopsis.
Liégard B, Baillet V, Etcheverry M, Joseph E, Lariagon C, Lemoine J, Evrard A, Colot V, Gravot A, Manzanares‑Dauleux MJ, Jubault M
New Phytol. 2019 Apr. 222(1):468-479.

MethMotif : an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles.
Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T
Nucleic Acids Res. 2019 Jan 8. 47(D1):D145-D154.

Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells.
Radomska KJ, Coulpier F, Gresset A, Schmitt A, Debbiche A, Lemoine S, Wolkenstein P, Vallat JM, Charnay P, Topilko P
Cancer Discov. 2019 Jan. 9(1):130-147.

Comparative characterization of putative chitin deacetylases from Phaeodactylum tricornutum and Thalassiosira pseudonana highlights the potential for distinct chitin-based metabolic processes in diatoms.
Shao Z, Thomas Y, Hembach L, Xing X, Duan D, Moerschbacher BM, Bulone V, Tirichine L, Bowler C
New Phytol. 2019 Mar. 221(4):1890-1905.

Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae.
Cooper MB, Kazamia E, Helliwell KE, Kudahl UJ, Sayer A, Wheeler GL, Smith AG
ISME J. 2019 Feb. 13(2):334-345.

Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom.
Murik O, Tirichine L, Prihoda J, Thomas Y, Araújo WL, Allen AE, Fernie AR, Bowler C
New Phytol. 2019 Feb. 221(3):1303-1316.

Dengue modeling in rural Cambodia : Statistical performance versus epidemiological relevance.
Champagne C, Paul R, Ly S, Duong V, Leang R, Cazelles B
Epidemics. 2019 Mar. 26:43-57.

A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution.
Clavel J, Aristide L, Morlon H
Syst Biol. 2019 Jan 1. 68(1):93-116.

Non-cell Autonomous OTX2 Homeoprotein Regulates Visual Cortex Plasticity Through Gadd45b/g.
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2018

Laurent Jourdren — 2018-01-18T11:11:23Z

A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO₂ in the Model Diatom Phaeodactylum tricornutum.
Huang R, Ding J, Gao K, Cruz de Carvalho MH, Tirichine L, Bowler C, Lin X
Front Microbiol. 2018. 9:3342.

Photolysis of a Caged, Fast-Equilibrating Glutamate Receptor Antagonist, MNI-Caged γ-D-Glutamyl-Glycine, to Investigate Transmitter Dynamics and Receptor Properties at Glutamatergic Synapses.
Palma‑Cerda F, Papageorgiou G, Barbour B, Auger C, Ogden D
Front Cell Neurosci. 2018. 12:465.

Cell biology and dynamics of Neuronal Na⁺/K⁺-ATPase in health and diseases.
Shrivastava AN, Triller A, Melki R
Neuropharmacology. 2018 Dec 11.

Heterogeneous Signaling at GABA and Glycine Co-releasing Terminals.
Aubrey KR, Supplisson S
Front Synaptic Neurosci. 2018. 10:40.

Transmission dynamics of re-emerging rabies in domestic dogs of rural China.
Tian H, Feng Y, Vrancken B, Cazelles B, Tan H, Gill MS, Yang Q, Li Y, Yang W, Zhang Y, Zhang Y, Lemey P, Pybus OG, Stenseth NC, Zhang H, Dellicour S
PLoS Pathog. 2018 Dec. 14(12):e1007392.

Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata.
Benchouaia M, Ripoche H, Sissoko M, Thiébaut A, Merhej J, Delaveau T, Fasseu L, Benaissa S, Lorieux G, Jourdren L, Le Crom S, Lelandais G, Corel E, Devaux F
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Macroscale fluorescence imaging against autofluorescence under ambient light.
Zhang R, Chouket R, Plamont MA, Kelemen Z, Espagne A, Tebo AG, Gautier A, Gissot L, Faure JD, Jullien L, Croquette V, Le Saux T
Light Sci Appl. 2018. 7:97.

BioLQM : A Java Toolkit for the Manipulation and Conversion of Logical Qualitative Models of Biological Networks.
Naldi A
Front Physiol. 2018. 9:1605.

Genome-wide identification of RETINOBLASTOMA RELATED 1 binding sites in Arabidopsis reveals novel DNA damage regulators.
Bouyer D, Heese M, Chen P, Harashima H, Roudier F, Grüttner C, Schnittger A
PLoS Genet. 2018 Nov. 14(11):e1007797.

Reconstruction of directed neuronal networks in a microfluidic device with asymmetric microchannels.
Courte J, Renault R, Jan A, Viovy JL, Peyrin JM, Villard C
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Amphioxus functional genomics and the origins of vertebrate gene regulation.
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle‑Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera‑Ubeda C, Skvortsova K, Jimenez‑Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech‑Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito‑Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez‑Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia‑Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez‑Skarmeta JL, Irimia M
Nature. 2018 Dec. 564(7734):64-70.

Microglial phenotypes in the human epileptic temporal lobe.
Morin‑Brureau M, Milior G, Royer J, Chali F, LeDuigou C, Savary E, Blugeon C, Jourdren L, Akbar D, Dupont S, Navarro V, Baulac M, Bielle F, Mathon B, Clemenceau S, Miles R
Brain. 2018 Dec 1. 141(12):3343-3360.

Oscillatory Cortical Activity in an Animal Model of Dystonia Caused by Cerebellar Dysfunction.
Georgescu EL, Georgescu IA, Zahiu CDM, Şteopoaie AR, Morozan VP, Pană AŞ, Zăgrean AM, Popa D
Front Cell Neurosci. 2018. 12:390.

Whole-Brain Neuronal Activity Displays Crackling Noise Dynamics.
Ponce‑Alvarez A, Jouary A, Privat M, Deco G, Sumbre G
Neuron. 2018 Dec 19. 100(6):1446-1459.e6.

Author Correction : Higher ambient synaptic glutamate at inhibitory versus excitatory neurons differentially impacts NMDA receptor activity.
Yao L, Grand T, Hanson JE, Paoletti P, Zhou Q
Nat Commun. 2018 Nov 15. 9(1):4887.

Adaptation of a Fungal Pathogen to Host Quantitative Resistance.
Frézal L, Jacqua G, Neema C
Front Plant Sci. 2018. 9:1554.

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise.
Schöne S, Bothe M, Einfeldt E, Borschiwer M, Benner P, Vingron M, Thomas‑Chollier M, Meijsing SH
PLoS Genet. 2018 Nov. 14(11):e1007793.

Author Correction : Clade-specific diversification dynamics of marine diatoms since the Jurassic.
Lewitus E, Bittner L, Malviya S, Bowler C, Morlon H
Nat Ecol Evol. 2018 Dec. 2(12):1993.

Unmasking GluN1/GluN3A excitatory glycine NMDA receptors.
Grand T, Abi Gerges S, David M, Diana MA, Paoletti P
Nat Commun. 2018 Nov 13. 9(1):4769.

Cerebellar learning using perturbations.
Bouvier G, Aljadeff J, Clopath C, Bimbard C, Ranft J, Blot A, Nadal JP, Brunel N, Hakim V, Barbour B
Elife. 2018 Nov 12. 7.

Active intermixing of indirect and direct neurons builds the striatal mosaic.
Tinterri A, Menardy F, Diana MA, Lokmane L, Keita M, Coulpier F, Lemoine S, Mailhes C, Mathieu B, Merchan‑Sala P, Campbell K, Gyory I, Grosschedl R, Popa D, Garel S
Nat Commun. 2018 Nov 9. 9(1):4725.

DNA methylation and gene expression alterations in zebrafish early-life stages exposed to the antibacterial agent triclosan.
Falisse E, Ducos B, Stockwell PA, Morison IM, Chatterjee A, Silvestre F
Environ Pollut. 2018 Dec. 243(Pt B):1867-1877.

Fast confocal fluorescence imaging in freely behaving mice.
Dussaux C, Szabo V, Chastagnier Y, Fodor J, Léger JF, Bourdieu L, Perroy J, Ventalon C
Sci Rep. 2018 Nov 2. 8(1):16262.

Slower environmental change hinders adaptation from standing genetic variation.
Guzella TS, Dey S, Chelo IM, Pino‑Querido A, Pereira VF, Proulx SR, Teotónio H
PLoS Genet. 2018 Nov. 14(11):e1007731.

Clade-specific diversification dynamics of marine diatoms since the Jurassic.
Lewitus E, Bittner L, Malviya S, Bowler C, Morlon H
Nat Ecol Evol. 2018 Nov. 2(11):1715-1723.

Chromosome evolution at the origin of the ancestral vertebrate genome.
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Genome Biol. 2018 Oct 17. 19(1):166.

Microglia and early brain development : An intimate journey.
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Science. 2018 Oct 12. 362(6411):185-189.

Higher ambient synaptic glutamate at inhibitory versus excitatory neurons differentially impacts NMDA receptor activity.
Yao L, Grand T, Hanson JE, Paoletti P, Zhou Q
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Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes.
Dehecq M, Decourty L, Namane A, Proux C, Kanaan J, Le Hir H, Jacquier A, Saveanu C
EMBO J. 2018 Nov 2. 37(21).

Compartmental models for seasonal hyperendemic bacterial meningitis in the African meningitis belt.
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Epidemiol Infect. 2018 Sep 28:1-11.

Monitored eCLIP : high accuracy mapping of RNA-protein interactions.
Hocq R, Paternina J, Alasseur Q, Genovesio A, Le Hir H
Nucleic Acids Res. 2018 Nov 30. 46(21):11553-11565.

Multiple factors behind early diversification of skull morphology in the continental radiation of New World monkeys.
Aristide L, Bastide P, Dos Reis SF, Pires Dos Santos TM, Lopes RT, Perez SI
Evolution. 2018 Dec. 72(12):2697-2711.

Single particle trajectories reveal active endoplasmic reticulum luminal flow.
Holcman D, Parutto P, Chambers JE, Fantham M, Young LJ, Marciniak SJ, Kaminski CF, Ron D, Avezov E
Nat Cell Biol. 2018 Oct. 20(10):1118-1125.

Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium.
Bischerour J, Bhullar S, Denby Wilkes C, Régnier V, Mathy N, Dubois E, Singh A, Swart E, Arnaiz O, Sperling L, Nowacki M, Bétermier M
Elife. 2018 Sep 18. 7.

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.
Sardina JL, Collombet S, Tian TV, Gómez A, Di Stefano B, Berenguer C, Brumbaugh J, Stadhouders R, Segura‑Morales C, Gut M, Gut IG, Heath S, Aranda S, Di Croce L, Hochedlinger K, Thieffry D, Graf T
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UPF1-like helicase grip on nucleic acids dictates processivity.
Kanaan J, Raj S, Decourty L, Saveanu C, Croquette V, Le Hir H
Nat Commun. 2018 Sep 14. 9(1):3752.

Dual-layer transposon repression in heads of Drosophila melanogaster.
van den Beek M, da Silva B, Pouch J, Ali Chaouche MEA, Carré C, Antoniewski C
RNA. 2018 Dec. 24(12):1749-1760.

Optogenetic stimulation of complex spatio-temporal activity patterns by acousto-optic light steering probes cerebellar granular layer integrative properties.
Hernandez O, Pietrajtis K, Mathieu B, Dieudonné S
Sci Rep. 2018 Sep 13. 8(1):13768.

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.
Wu X, Kabalane H, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer‑Satta V, Arneodo A, Audit B, Hyrien O
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DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.
Nassrallah A, Rougée M, Bourbousse C, Drevensek S, Fonseca S, Iniesto E, Ait‑Mohamed O, Deton‑Cabanillas AF, Zabulon G, Ahmed I, Stroebel D, Masson V, Lombard B, Eeckhout D, Gevaert K, Loew D, Genovesio A, Breyton C, De Jaeger G, Bowler C, Rubio V, Barneche F
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Trio GEF mediates RhoA activation downstream of Slit2 and coordinates telencephalic wiring.
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Cracking the Code of Biodiversity Responses to Past Climate Change.
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Trends Ecol Evol. 2018 Oct. 33(10):765-776.

A mating-type mutagenesis screen identifies a zinc-finger protein required for specific DNA excision events in Paramecium.
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Nucleic Acids Res. 2018 Oct 12. 46(18):9550-9562.

Mapping the imprint of biotic interactions on β-diversity.
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Ecol Lett. 2018 Nov. 21(11):1660-1669.

Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain.
Chasseigneaux S, Moraca Y, Cochois‑Guégan V, Boulay AC, Gilbert A, Le Crom S, Blugeon C, Firmo C, Cisternino S, Laplanche JL, Curis E, Declèves X, Saubaméa B
Sci Rep. 2018 Aug 16. 8(1):12272.

Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models.
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PLoS Comput Biol. 2018 Aug. 14(8):e1006211.

Inferring Evolutionary Process From Neuroanatomical Data.
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Front Neuroanat. 2018. 12:54.

The gut microbiome is associated with behavioural task in honey bees.
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Insectes Soc. 2018. 65(3):419-429.

Voltage- and Branch-Specific Climbing Fiber Responses in Purkinje Cells.
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Cell Rep. 2018 Aug 7. 24(6):1536-1549.

The First 100 nm Inside the Pre-synaptic Terminal Where Calcium Diffusion Triggers Vesicular Release.
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Front Synaptic Neurosci. 2018. 10:23.

Cooperation, cis-interactions, versatility and evolutionary plasticity of multiple cis-acting elements underlie krox20 hindbrain regulation.
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PLoS Genet. 2018 Aug. 14(8):e1007581.

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.
Tubbs A, Sridharan S, van Wietmarschen N, Maman Y, Callen E, Stanlie A, Wu W, Wu X, Day A, Wong N, Yin M, Canela A, Fu H, Redon C, Pruitt SC, Jaszczyszyn Y, Aladjem MI, Aplan PD, Hyrien O, Nussenzweig A
Cell. 2018 Aug 23. 174(5):1127-1142.e19.

Natural Genetic Variation in a Multigenerational Phenotype in C. elegans.
Frézal L, Demoinet E, Braendle C, Miska E, Félix MA
Curr Biol. 2018 Aug 20. 28(16):2588-2596.e8.

Pristionchus nematodes occur frequently in diverse rotting vegetal substrates and are not exclusively necromenic, while Panagrellus redivivoides is found specifically in rotting fruits.
Félix MA, Ailion M, Hsu JC, Richaud A, Wang J
PLoS One. 2018. 13(8):e0200851.

Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates.
Aguilée R, Gascuel F, Lambert A, Ferriere R
Nat Commun. 2018 Aug 1. 9(1):3013.

Microbiote et microglie : des interactions prénatales et postnatales distinctes selon l'identité sexuelle.
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Med Sci (Paris). 2018 Jun-Jul. 34(6-7):527-529.

Single molecule kinetics uncover roles for E. coli RecQ DNA helicase domains and interaction with SSB.
Bagchi D, Manosas M, Zhang W, Manthei KA, Hodeib S, Ducos B, Keck JL, Croquette V
Nucleic Acids Res. 2018 Sep 19. 46(16):8500-8515.

Rapid Voltage Sensing with Single Nanorods via the Quantum Confined Stark Effect.
Bar‑Elli O, Steinitz D, Yang G, Tenne R, Ludwig A, Kuo Y, Triller A, Weiss S, Oron D
ACS Photonics. 2018 Jul 18. 5(7):2860-2867.

Physiological Starvation Promotes Caenorhabditis elegans Vulval Induction.
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G3 (Bethesda). 2018 Aug 30. 8(9):3069-3081.

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial).
Levy N, Naldi A, Hernandez C, Stoll G, Thieffry D, Zinovyev A, Calzone L, Paulevé L
Front Physiol. 2018. 9:787.

Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability.
Dardalhon‑Cuménal D, Deraze J, Dupont CA, Ribeiro V, Coléno‑Costes A, Pouch J, Le Crom S, Thomassin H, Debat V, Randsholt NB, Peronnet F
PLoS Genet. 2018 Jul. 14(7):e1007498.

Principles of Functional Circuit Connectivity : Insights From Spontaneous Activity in the Zebrafish Optic Tectum.
Marachlian E, Avitan L, Goodhill GJ, Sumbre G
Front Neural Circuits. 2018. 12:46.

The CoLoMoTo Interactive Notebook : Accessible and Reproducible Computational Analyses for Qualitative Biological Networks.
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Front Physiol. 2018. 9:680.

Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0.
Naldi A, Hernandez C, Abou‑Jaoudé W, Monteiro PT, Chaouiya C, Thieffry D
Front Physiol. 2018. 9:646.

Low resolution scans can provide a sufficiently accurate, cost- and time-effective alternative to high resolution scans for 3D shape analyses.
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PeerJ. 2018. 6:e5032.

The mysterious origins of microglia.
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Nat Neurosci. 2018 Jul. 21(7):897-899.

Gene(s) and individual feeding behavior : Exploring eco-evolutionary dynamics underlying left-right asymmetry in the scale-eating cichlid fish Perissodus microlepis.
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Ecol Evol. 2018 Jun. 8(11):5495-5507.

Exon Junction Complexes can have distinct functional flavours to regulate specific splicing events.
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Sci Rep. 2018 Jun 22. 8(1):9509.

Ubiquitous abundance distribution of non-dominant plankton across the global ocean.
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Nat Ecol Evol. 2018 Aug. 2(8):1243-1249.

In need of signalling pathway data.
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Eur J Heart Fail. 2018 Aug. 20(8):1202-1204.

Ependymal cilia beating induces an actin network to protect centrioles against shear stress.
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Nat Commun. 2018 Jun 11. 9(1):2279.

Cancer : From Wild-Type to Mutant Huntingtin.
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J Huntingtons Dis. 2018. 7(3):201-208.

Spatiotemporal variation of the association between climate dynamics and HFRS outbreaks in Eastern China during 2005-2016 and its geographic determinants.
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PLoS Negl Trop Dis. 2018 Jun. 12(6):e0006554.

Transcriptional control and exploitation of an immune-responsive family of plant retrotransposons.
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EMBO J. 2018 Jul 13. 37(14).

The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation.
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Elife. 2018 Jun 1. 7.

Supergene Evolution Triggered by the Introgression of a Chromosomal Inversion.
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Curr Biol. 2018 Jun 4. 28(11):1839-1845.e3.

Microglia Under the Spotlight : Activity and Complement-Dependent Engulfment of Synapses.
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Trends Neurosci. 2018 Jun. 41(6):332-334.

Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development.
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Plant Reprod. 2018 Sep. 31(3):291-307.

Dissection of DNA double-strand-break repair using novel single-molecule forceps.
Wang JL, Duboc C, Wu Q, Ochi T, Liang S, Tsutakawa SE, Lees‑Miller SP, Nadal M, Tainer JA, Blundell TL, Strick TR
Nat Struct Mol Biol. 2018 Jun. 25(6):482-487.

Polycomb Repressive Complex 2 attenuates the very high expression of the Arabidopsis gene NRT2.1.
Bellegarde F, Herbert L, Séré D, Caillieux E, Boucherez J, Fizames C, Roudier F, Gojon A, Martin A
Sci Rep. 2018 May 21. 8(1):7905.

Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms.
Kazamia E, Sutak R, Paz‑Yepes J, Dorrell RG, Vieira FRJ, Mach J, Morrissey J, Leon S, Lam F, Pelletier E, Camadro JM, Bowler C, Lesuisse E
Sci Adv. 2018 May. 4(5):eaar4536.

Transcription-Coupled Repair and Complex Biology.
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J Mol Biol. 2018 Oct 26. 430(22):4496-4512.

Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris.
Nomaguchi T, Maeda Y, Yoshino T, Asahi T, Tirichine L, Bowler C, Tanaka T
BMC Genomics. 2018 May 4. 19(1):330.

A cautionary TALE : how plant breeding may have favoured expanded TALE repertoires in Xanthomonas.
Schandry N, Jacobs JM, Szurek B, Perez‑Quintero AL
Mol Plant Pathol. 2018 Jun. 19(6):1297-1301.

RSAT 2018 : regulatory sequence analysis tools 20th anniversary.
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Nucleic Acids Res. 2018 Jul 2. 46(W1):W209-W214.

Quadruplexes in 'Dicty' : crystal structure of a four-quartet G-quadruplex formed by G-rich motif found in the Dictyostelium discoideum genome.
Guédin A, Lin LY, Armane S, Lacroix L, Mergny JL, Thore S, Yatsunyk LA
Nucleic Acids Res. 2018 Jun 1. 46(10):5297-5307.

Mib1 prevents Notch Cis-inhibition to defer differentiation and preserve neuroepithelial integrity during neural delamination.
Baek C, Freem L, Goïame R, Sang H, Morin X, Tozer S
PLoS Biol. 2018 Apr. 16(4):e2004162.

Evidence for altered dendritic spine compartmentalization in Alzheimer's disease and functional effects in a mouse model.
Androuin A, Potier B, Nägerl UV, Cattaert D, Danglot L, Thierry M, Youssef I, Triller A, Duyckaerts C, El Hachimi KH, Dutar P, Delatour B, Marty S
Acta Neuropathol. 2018 Jun. 135(6):839-854.

Triheteromeric NMDA receptors : from structure to synaptic physiology.
Stroebel D, Casado M, Paoletti P
Curr Opin Physiol. 2018 Apr. 2:1-12.

Ranked Tree Shapes, Nonrandom Extinctions, and the Loss of Phylogenetic Diversity.
Maliet O, Gascuel F, Lambert A
Syst Biol. 2018 Nov 1. 67(6):1025-1040.

Urbanization prolongs hantavirus epidemics in cities.
Tian H, Hu S, Cazelles B, Chowell G, Gao L, Laine M, Li Y, Yang H, Li Y, Yang Q, Tong X, Huang R, Bjornstad ON, Xiao H, Stenseth NC
Proc Natl Acad Sci U S A. 2018 May 1. 115(18):4707-4712.

Probing Ion Channel Structure and Function Using Light-Sensitive Amino Acids.
Klippenstein V, Mony L, Paoletti P
Trends Biochem Sci. 2018 Jun. 43(6):436-451.

Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends.
Klinger CM, Paoli L, Newby RJ, Wang MY, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, Cahoon AB, Dorrell RG, Richardson E
Genome Biol Evol. 2018 Apr 1. 10(4):1019-1038.

Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype.
Boulay AC, Gilbert A, Oliveira Moreira V, Blugeon C, Perrin S, Pouch J, Le Crom S, Ducos B, Cohen‑Salmon M
Brain Sci. 2018 Mar 22. 8(4).

Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms.
Rastogi A, Maheswari U, Dorrell RG, Vieira FRJ, Maumus F, Kustka A, McCarthy J, Allen AE, Kersey P, Bowler C, Tirichine L
Sci Rep. 2018 Mar 19. 8(1):4834.

Asymmetric adhesion of rod-shaped bacteria controls microcolony morphogenesis.
Duvernoy MC, Mora T, Ardré M, Croquette V, Bensimon D, Quilliet C, Ghigo JM, Balland M, Beloin C, Lecuyer S, Desprat N
Nat Commun. 2018 Mar 16. 9(1):1120.

High-throughput fecundity measurements in Drosophila.
Nouhaud P, Mallard F, Poupardin R, Barghi N, Schlötterer C
Sci Rep. 2018 Mar 13. 8(1):4469.

Chemical regulation of body feather microbiota in a wild bird.
Jacob S, Sallé L, Zinger L, Chaine AS, Ducamp C, Boutault L, Russell AF, Heeb P
Mol Ecol. 2018 Apr. 27(7):1727-1738.

Müller glia-derived PRSS56 is required to sustain ocular axial growth and prevent refractive error.
Paylakhi S, Labelle‑Dumais C, Tolman NG, Sellarole MA, Seymens Y, Saunders J, Lakosha H, deVries WN, Orr AC, Topilko P, John SW, Nair KS
PLoS Genet. 2018 Mar. 14(3):e1007244.

A screen for deeply conserved non-coding GWAS SNPs uncovers a MIR-9-2 functional mutation associated to retinal vasculature defects in human.
Madelaine R, Notwell JH, Skariah G, Halluin C, Chen CC, Bejerano G, Mourrain P
Nucleic Acids Res. 2018 Apr 20. 46(7):3517-3531.

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export.
Leblanc K, Quéguiner B, Diaz F, Cornet V, Michel‑Rodriguez M, Durrieu de Madron X, Bowler C, Malviya S, Thyssen M, Grégori G, Rembauville M, Grosso O, Poulain J, de Vargas C, Pujo‑Pay M, Conan P
Nat Commun. 2018 Mar 5. 9(1):953.

Sequences Flanking the Gephyrin-Binding Site of GlyRβ Tune Receptor Stabilization at Synapses.
Grünewald N, Jan A, Salvatico C, Kress V, Renner M, Triller A, Specht CG, Schwarz G
eNeuro. 2018 Jan-Feb. 5(1).

Optogenetic Tractography for anatomo-functional characterization of cortico-subcortical neural circuits in non-human primates.
Senova S, Poupon C, Dauguet J, Stewart HJ, Dugué GP, Jan C, Hosomi K, Ralph GS, Barnes L, Drouot X, Pouzat C, Mangin JF, Pain F, Doignon I, Aron‑Badin R, Brouillet E, Boyden ES, Mitrophanous KA, Hantraye P, Palfi S
Sci Rep. 2018 Feb 20. 8(1):3362.

Deconvolution of Voltage Sensor Time Series and Electro-diffusion Modeling Reveal the Role of Spine Geometry in Controlling Synaptic Strength.
Cartailler J, Kwon T, Yuste R, Holcman D
Neuron. 2018 Mar 7. 97(5):1126-1136.e10.

Handedness in gestural and manipulative actions in male hunter-gatherer Aka pygmies from Central African Republic.
Robira B, Pouydebat E, San‑Galli A, Meulman EJM, Aubaile F, Breuer T, Masi S
Am J Phys Anthropol. 2018 Jun. 166(2):481-491.

FRET Image Correlation Spectroscopy Reveals RNAPII-Independent P-TEFb Recruitment on Chromatin.
Bidaux G, Le Nézet C, Pisfil MG, Henry M, Furlan A, Bensaude O, Vandenbunder B, Héliot L
Biophys J. 2018 Feb 6. 114(3):522-533.

Differential influences of allometry, phylogeny and environment on the rostral shape diversity of extinct South American notoungulates.
Gomes Rodrigues H, Cornette R, Clavel J, Cassini G, Bhullar BS, Fernández‑Monescillo M, Moreno K, Herrel A, Billet G
R Soc Open Sci. 2018 Jan. 5(1):171816.

Natural Infection of C. elegans by an Oomycete Reveals a New Pathogen-Specific Immune Response.
Osman GA, Fasseas MK, Koneru SL, Essmann CL, Kyrou K, Srinivasan MA, Zhang G, Sarkies P, Félix MA, Barkoulas M
Curr Biol. 2018 Feb 19. 28(4):640-648.e5.

Increased Potency and Selectivity for Group III Metabotropic Glutamate Receptor Agonists Binding at Dual sites.
Selvam C, Lemasson IA, Brabet I, Oueslati N, Karaman B, Cabaye A, Tora AS, Commare B, Courtiol T, Cesarini S, McCort‑Tranchepain I, Rigault D, Mony L, Bessiron T, McLean H, Leroux FR, Colobert F, Daniel H, Goupil‑Lamy A, Bertrand HO, Goudet C, Pin JP, Acher FC
J Med Chem. 2018 Mar 8. 61(5):1969-1989.

Contrasting impacts of competition on ecological and social trait evolution in songbirds.
Drury JP, Tobias JA, Burns KJ, Mason NA, Shultz AJ, Morlon H
PLoS Biol. 2018 Jan. 16(1):e2003563.

HTLV-1 Tax plugs and freezes UPF1 helicase leading to nonsense-mediated mRNA decay inhibition.
Fiorini F, Robin JP, Kanaan J, Borowiak M, Croquette V, Le Hir H, Jalinot P, Mocquet V
Nat Commun. 2018 Jan 30. 9(1):431.

A conserved structural element in the RNA helicase UPF1 regulates its catalytic activity in an isoform-specific manner.
Gowravaram M, Bonneau F, Kanaan J, Maciej VD, Fiorini F, Raj S, Croquette V, Le Hir H, Chakrabarti S
Nucleic Acids Res. 2018 Mar 16. 46(5):2648-2659.

A global ocean atlas of eukaryotic genes.
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc‑Mathieu R, Lima‑Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels‑Lewis S, Picheral M, Searson S, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C, Wincker P
Nat Commun. 2018 Jan 25. 9(1):373.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels‑Lewis S, Picheral M, Searson S, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P
Nat Commun. 2018 Jan 22. 9(1):310.

The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean.
Vincent FJ, Colin S, Romac S, Scalco E, Bittner L, Garcia Y, Lopes RM, Dolan JR, Zingone A, de Vargas C, Bowler C
ISME J. 2018 Apr. 12(4):1094-1108.

Functional Principles of Posterior Septal Inputs to the Medial Habenula.
Otsu Y, Lecca S, Pietrajtis K, Rousseau CV, Marcaggi P, Dugué GP, Mailhes‑Hamon C, Mameli M, Diana MA
Cell Rep. 2018 Jan 16. 22(3):693-705.

Hexim1, an RNA-controlled protein hub.
Michels AA, Bensaude O
Transcription. 2018. 9(4):262-271.

Control of Protein Activity and Gene Expression by Cyclofen-OH Uncaging.
Zhang W, Hamouri F, Feng Z, Aujard I, Ducos B, Ye S, Weiss S, Volovitch M, Vriz S, Jullien L, Bensimon D
Chembiochem. 2018 Jun 18. 19(12):1232-1238.

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.
Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti‑Renom MA, Graf T
Nat Genet. 2018 Feb. 50(2):238-249.

Modelling interaction dynamics between two foliar pathogens in wheat : a multi-scale approach.
Garin G, Pradal C, Fournier C, Claessen D, Houlès V, Robert C
Ann Bot. 2018 Apr 18. 121(5):927-940.

Spatial patterns generated by simultaneous cooperation and exploitation favour the evolution of altruism.
Yamauchi A, van Baalen M, Sabelis MW
J Theor Biol. 2018 Mar 14. 441:58-67.

Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific Manner.
Thion MS, Low D, Silvin A, Chen J, Grisel P, Schulte‑Schrepping J, Blecher R, Ulas T, Squarzoni P, Hoeffel G, Coulpier F, Siopi E, David FS, Scholz C, Shihui F, Lum J, Amoyo AA, Larbi A, Poidinger M, Buttgereit A, Lledo PM, Greter M, Chan JKY, Amit I, Beyer M, Schultze JL, Schlitzer A, Pettersson S, Ginhoux F, Garel S
Cell. 2018 Jan 25. 172(3):500-516.e16.

Detecting Environment-Dependent Diversification From Phylogenies : A Simulation Study and Some Empirical Illustrations.
Lewitus E, Morlon H
Syst Biol. 2018 Jul 1. 67(4):576-593.

Neobodonids are dominant kinetoplastids in the global ocean.
Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, Lukeš J, Horák A
Environ Microbiol. 2018 Feb. 20(2):878-889.

FANCD2 binding identifies conserved fragile sites at large transcribed genes in avian cells.
Pentzold C, Shah SA, Hansen NR, Le Tallec B, Seguin‑Orlando A, Debatisse M, Lisby M, Oestergaard VH
Nucleic Acids Res. 2018 Feb 16. 46(3):1280-1294.

TopA, the Sulfolobus solfataricus topoisomerase III, is a decatenase.
Bizard AH, Yang X, Débat H, Fogg JM, Zechiedrich L, Strick TR, Garnier F, Nadal M
Nucleic Acids Res. 2018 Jan 25. 46(2):861-872.

The Local Coexistence Pattern of Selfing Genotypes in Caenorhabditis elegans Natural Metapopulations.
Richaud A, Zhang G, Lee D, Lee J, Félix MA
Genetics. 2018 Feb. 208(2):807-821.

Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants.
Joly S, Lambert F, Alexandre H, Clavel J, Léveillé‑Bourret É, Clark JL
Evolution. 2018 Feb. 72(2):244-260.

The SlCBL10 Calcineurin B-Like Protein Ensures Plant Growth under Salt Stress by Regulating Na⁺ and Ca²⁺ Homeostasis.
Egea I, Pineda B, Ortíz‑Atienza A, Plasencia FA, Drevensek S, García‑Sogo B, Yuste‑Lisbona FJ, Barrero‑Gil J, Atarés A, Flores FB, Barneche F, Angosto T, Capel C, Salinas J, Vriezen W, Esch E, Bowler C, Bolarín MC, Moreno V, Lozano R
Plant Physiol. 2018 Feb. 176(2):1676-1693.

Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements.
Lewis SH, Quarles KA, Yang Y, Tanguy M, Frézal L, Smith SA, Sharma PP, Cordaux R, Gilbert C, Giraud I, Collins DH, Zamore PD, Miska EA, Sarkies P, Jiggins FM
Nat Ecol Evol. 2018 Jan. 2(1):174-181.

Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression.
Berthelot C, Villar D, Horvath JE, Odom DT, Flicek P
Nat Ecol Evol. 2018 Jan. 2(1):152-163.

Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits : how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation.
Pirrello J, Deluche C, Frangne N, Gévaudant F, Maza E, Djari A, Bourge M, Renaudin JP, Brown S, Bowler C, Zouine M, Chevalier C, Gonzalez N
Plant J. 2018 Jan. 93(2):387-398.

Krox20 defines a subpopulation of cardiac neural crest cells contributing to arterial valves and bicuspid aortic valve.
Odelin G, Faure E, Coulpier F, Di Bonito M, Bajolle F, Studer M, Avierinos JF, Charnay P, Topilko P, Zaffran S
Development. 2018 Jan 3. 145(1).

ANISEED 2017 : extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Guéroult‑Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P
Nucleic Acids Res. 2018 Jan 4. 46(D1):D718-D725.

The "sacral parasympathetic" : ontogeny and anatomy of a myth.
Espinosa‑Medina I, Saha O, Boismoreau F, Brunet JF
Clin Auton Res. 2018 Feb. 28(1):13-21.

Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays.
Rose F, Basu S, Rexhepaj E, Chauchereau A, Del Nery E, Genovesio A
SLAS Technol. 2018 Jun. 23(3):243-251.

Genomicus 2018 : karyotype evolutionary trees and on-the-fly synteny computing.
Nguyen NTT, Vincens P, Roest Crollius H, Louis A
Nucleic Acids Res. 2018 Jan 4. 46(D1):D816-D822.

Cell Type-Specific Profiling of Chromatin Modifications and Associated Proteins.
Morao AK, Caillieux E, Colot V, Roudier F
Methods Mol Biol. 2018. 1675:111-130.

Profiling Developmentally and Environmentally Controlled Chromatin Reprogramming.
Bourbousse C, Benhamed M, Barneche F
Methods Mol Biol. 2018. 1675:3-30.

An Assessment of Phylogenetic Tools for Analyzing the Interplay Between Interspecific Interactions and Phenotypic Evolution.
Drury JP, Grether GF, Garland T Jr, Morlon H
Syst Biol. 2018 May 1. 67(3):413-427.

Laser microdissection : A powerful tool for genomics at cell level.
Bevilacqua C, Ducos B
Mol Aspects Med. 2018 Feb. 59:5-27.

Tangential migration of corridor guidepost neurons contributes to anxiety circuits.
Tinterri A, Deck M, Keita M, Mailhes C, Rubin AN, Kessaris N, Lokmane L, Bielle F, Garel S
J Comp Neurol. 2018 Feb 15. 526(3):397-411.

Nerves, H₂O₂ and Shh : Three players in the game of regeneration.
Meda F, Rampon C, Dupont E, Gauron C, Mourton A, Queguiner I, Thauvin M, Volovitch M, Joliot A, Vriz S
Semin Cell Dev Biol. 2018 Aug. 80:65-73.

Neurons derived from patients with bipolar disorder divide into intrinsically different sub-populations of neurons, predicting the patients' responsiveness to lithium.
Stern S, Santos R, Marchetto MC, Mendes APD, Rouleau GA, Biesmans S, Wang QW, Yao J, Charnay P, Bang AG, Alda M, Gage FH
Mol Psychiatry. 2018 Jun. 23(6):1453-1465.

2017

Laurent Jourdren — 2017-01-19T18:19:08Z

Statistics of randomly cross-linked polymer models to interpret chromatin conformation capture data.
Shukron O, Holcman D
Phys Rev E. 2017 Jul. 96(1-1):012503.

Modelling interaction dynamics between two foliar pathogens in wheat : a multi-scale approach.
Garin G, Pradal C, Fournier C, Claessen D, Houlès V, Robert C
Ann Bot. 2017 Dec 29.

Detecting environment-dependent diversi_cation from phylogenies : a simulation study and some empirical illustrations.
Lewitus E, Morlon H
Syst Biol. 2017 Dec 20.

Trouble bipolaire : nouvelles pistes diagnostiques et thérapeutiques fondées sur la reprogrammation cellulaire.
Santos R, Charnay P
Med Sci (Paris). 2017 Dec. 33(12):1048-1050.

Automatized image processing of bovine blastocysts produced in vitro for quantitative variable determination.
Rocha JC, Passalia FJ, Matos FD, Takahashi MB, Maserati MP Jr, Alves MF, de Almeida TG, Cardoso BL, Basso AC, Nogueira MFG
Sci Data. 2017 Dec 19. 4:170192.

Author Correction : Resonant out-of-phase fluorescence microscopy and remote imaging overcome spectral limitations.
Quérard J, Zhang R, Kelemen Z, Plamont MA, Xie X, Chouket R, Roemgens I, Korepina Y, Albright S, Ipendey E, Volovitch M, Sladitschek HL, Neveu P, Gissot L, Gautier A, Faure JD, Croquette V, Le Saux T, Jullien L
Nat Commun. 2017 Dec 14. 8(1):2173.

A Simple and Powerful Analysis of Lateral Subdiffusion Using Single Particle Tracking.
Renner M, Wang L, Levi S, Hennekinne L, Triller A
Biophys J. 2017 Dec 5. 113(11):2452-2463.

Inhibition of group-I metabotropic glutamate receptors protects against prion toxicity.
Goniotaki D, Lakkaraju AKK, Shrivastava AN, Bakirci P, Sorce S, Senatore A, Marpakwar R, Hornemann S, Gasparini F, Triller A, Aguzzi A
PLoS Pathog. 2017 Nov. 13(11):e1006733.

Boundary cap cells in development and disease.
Radomska KJ, Topilko P
Curr Opin Neurobiol. 2017 Dec. 47:209-215.

Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming.
Ruetz T, Pfisterer U, Di Stefano B, Ashmore J, Beniazza M, Tian TV, Kaemena DF, Tosti L, Tan W, Manning JR, Chantzoura E, Ottosson DR, Collombet S, Johnsson A, Cohen E, Yusa K, Linnarsson S, Graf T, Parmar M, Kaji K
Cell Stem Cell. 2017 Dec 7. 21(6):791-805.e9.

Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice.
Milet C, Bléher M, Allbright K, Orgeur M, Coulpier F, Duprez D, Havis E
Sci Rep. 2017 Nov 23. 7(1):16153.

The mechanism of variability in transcription start site selection.
Yu L, Winkelman JT, Pukhrambam C, Strick TR, Nickels BE, Ebright RH
Elife. 2017 Nov 23. 6.

Emerging Mechanisms Underlying Dynamics of GABAergic Synapses.
Maffei A, Charrier C, Caiati MD, Barberis A, Mahadevan V, Woodin MA, Tyagarajan SK
J Neurosci. 2017 Nov 8. 37(45):10792-10799.

Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays.
Rose F, Basu S, Rexhepaj E, Chauchereau A, Del Nery E, Genovesio A
SLAS Technol. 2017 Nov 1:2472630317740831.

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.
Colin S, Coelho LP, Sunagawa S, Bowler C, Karsenti E, Bork P, Pepperkok R, de Vargas C
Elife. 2017 Oct 31. 6.

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation.
Chica C, Louis A, Roest Crollius H, Colot V, Roudier F
Genome Biol. 2017 Oct 31. 18(1):207.

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns.
Saudemont B, Popa A, Parmley JL, Rocher V, Blugeon C, Necsulea A, Meyer E, Duret L
Genome Biol. 2017 Oct 30. 18(1):208.

On place and time : microglia in embryonic and perinatal brain development.
Thion MS, Garel S
Curr Opin Neurobiol. 2017 Dec. 47:121-130.

Dual origin of enteric neurons in vagal Schwann cell precursors and the sympathetic neural crest.
Espinosa‑Medina I, Jevans B, Boismoreau F, Chettouh Z, Enomoto H, Müller T, Birchmeier C, Burns AJ, Brunet JF
Proc Natl Acad Sci U S A. 2017 Nov 7. 114(45):11980-11985.

Estradiol modulates the efficacy of synaptic inhibition by decreasing the dwell time of GABA_A receptors at inhibitory synapses.
Mukherjee J, Cardarelli RA, Cantaut‑Belarif Y, Deeb TZ, Srivastava DP, Tyagarajan SK, Pangalos MN, Triller A, Maguire J, Brandon NJ, Moss SJ
Proc Natl Acad Sci U S A. 2017 Oct 31. 114(44):11763-11768.

René Thomas (1928-2017) : From DNA denaturation to positive gene regulation, kinetic logic and complex dynamical systems.
Thieffry D, Toussaint A
Bioessays. 2017 Dec. 39(12).

Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel.
Noble LM, Chelo I, Guzella T, Afonso B, Riccardi DD, Ammerman P, Dayarian A, Carvalho S, Crist A, Pino‑Querido A, Shraiman B, Rockman MV, Teotónio H
Genetics. 2017 Dec. 207(4):1663-1685.

Resonant out-of-phase fluorescence microscopy and remote imaging overcome spectral limitations.
Quérard J, Zhang R, Kelemen Z, Plamont MA, Xie X, Chouket R, Roemgens I, Korepina Y, Albright S, Ipendey E, Volovitch M, Sladitschek HL, Neveu P, Gissot L, Gautier A, Faure JD, Croquette V, Le Saux T, Jullien L
Nat Commun. 2017 Oct 17. 8(1):969.

Design of Light-Sensitive NMDARs by Genetically Encoded Photo-Cross-Linkers.
Tian M, Ye S
Methods Mol Biol. 2017. 1677:185-197.

Calibrated mitotic oscillator drives motile ciliogenesis.
Al Jord A, Shihavuddin A, Servignat d'Aout R, Faucourt M, Genovesio A, Karaiskou A, Sobczak‑Thépot J, Spassky N, Meunier A
Science. 2017 Nov 10. 358(6364):803-806.

Analysis of Claims that the Brain Extracellular Impedance Is High and Non-resistive.
Barbour B
Biophys J. 2017 Oct 3. 113(7):1636-1638.

P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.
Hubstenberger A, Courel M, Bénard M, Souquere S, Ernoult‑Lange M, Chouaib R, Yi Z, Morlot JB, Munier A, Fradet M, Daunesse M, Bertrand E, Pierron G, Mozziconacci J, Kress M, Weil D
Mol Cell. 2017 Oct 5. 68(1):144-157.e5.

Evolution of gene expression after whole-genome duplication : New insights from the spotted gar genome.
Pasquier J, Braasch I, Batzel P, Cabau C, Montfort J, Nguyen T, Jouanno E, Berthelot C, Klopp C, Journot L, Postlethwait JH, Guiguen Y, Bobe J
J Exp Zool B Mol Dev Evol. 2017 Nov. 328(7):709-721.

DNA methylation dynamics during early plant life.
Bouyer D, Kramdi A, Kassam M, Heese M, Schnittger A, Roudier F, Colot V
Genome Biol. 2017 Sep 25. 18(1):179.

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction.
Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F
Biotechnol Biofuels. 2017. 10:209.

Differential cellular responses associated with oxidative stress and cell fate decision under nitrate and phosphate limitations in Thalassiosira pseudonana : Comparative proteomics.
Lin Q, Liang JR, Huang QQ, Luo CS, Anderson DM, Bowler C, Chen CP, Li XS, Gao YH
PLoS One. 2017. 12(9):e0184849.

Electrostatics of non-neutral biological microdomains.
Cartailler J, Schuss Z, Holcman D
Sci Rep. 2017 Sep 12. 7(1):11269.

Alpha subunit-dependent glycine receptor clustering and regulation of synaptic receptor numbers.
Patrizio A, Renner M, Pizzarelli R, Triller A, Specht CG
Sci Rep. 2017 Sep 7. 7(1):10899.

Endodermal germ-layer formation through active actin-driven migration triggered by N-cadherin.
Giger FA, David NB
Proc Natl Acad Sci U S A. 2017 Sep 19. 114(38):10143-10148.

Two loci single particle trajectories analysis : constructing a first passage time statistics of local chromatin exploration.
Shukron O, Hauer M, Holcman D
Sci Rep. 2017 Sep 4. 7(1):10346.

Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas.
Bal E, Park HS, Belaid‑Choucair Z, Kayserili H, Naville M, Madrange M, Chiticariu E, Hadj‑Rabia S, Cagnard N, Kuonen F, Bachmann D, Huber M, Le Gall C, Côté F, Hanein S, Rosti RÖ, Aslanger AD, Waisfisz Q, Bodemer C, Hermine O, Morice‑Picard F, Labeille B, Caux F, Mazereeuw‑Hautier J, Philip N, Levy N, Taieb A, Avril MF, Headon DJ, Gyapay G, Magnaldo T, Fraitag S, Crollius HR, Vabres P, Hohl D, Munnich A, Smahi A
Nat Med. 2017 Oct. 23(10):1226-1233.

Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin.
Bonnet A, Lambert G, Ernest S, Dutrieux FX, Coulpier F, Lemoine S, Lobbardi R, Rosa FM
Dev Cell. 2017 Sep 11. 42(5):527-541.e4.

Optical Control of Tumor Induction in the Zebrafish.
Feng Z, Nam S, Hamouri F, Aujard I, Ducos B, Vriz S, Volovitch M, Jullien L, Lin S, Weiss S, Bensimon D
Sci Rep. 2017 Aug 23. 7(1):9195.

Single molecule high-throughput footprinting of small and large DNA ligands.
Manosas M, Camunas‑Soler J, Croquette V, Ritort F
Nat Commun. 2017 Aug 21. 8(1):304.

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm.
Bestion E, Jacob S, Zinger L, Di Gesu L, Richard M, White J, Cote J
Nat Ecol Evol. 2017 May 8. 1(6):161.

An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation.
di Pietro F, Valon L, Li Y, Goïame R, Genovesio A, Morin X
Curr Biol. 2017 Aug 21. 27(16):2452-2464.e8.

A Method Based on Artificial Intelligence To Fully Automatize The Evaluation of Bovine Blastocyst Images.
Rocha JC, Passalia FJ, Matos FD, Takahashi MB, Ciniciato DS, Maserati MP, Alves MF, de Almeida TG, Cardoso BL, Basso AC, Nogueira MFG
Sci Rep. 2017 Aug 9. 7(1):7659.

Multi-scale tracking reveals scale-dependent chromatin dynamics after DNA damage.
Miné‑Hattab J, Recamier V, Izeddin I, Rothstein R, Darzacq X
Mol Biol Cell. 2017 Aug 9.

HEXIM1 Has Different Functions within Different RNA-Protein Complexes.
Bensaude O
Mol Cell. 2017 Aug 3. 67(3):357-359.

Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.
McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth R, Lichtle C, Goodenough U, Bowler CP, Dupont CL, Allen AE
Plant Cell. 2017 Aug. 29(8):2047-2070.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.
Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M, Acinas SG, Royo‑Llonch M, Cornejo‑Castillo FM, Logares R, Fernández‑Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels‑Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL, Pesant S, Karsenti E, Wincker P
Sci Data. 2017 Aug 1. 4:170093.

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas‑Chollier M, Noordermeer D, Charnay P, Gilardi‑Hebenstreit P
PLoS Genet. 2017 Jul. 13(7):e1006903.

Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.
Boeva V, Louis‑Brennetot C, Peltier A, Durand S, Pierre‑Eugène C, Raynal V, Etchevers HC, Thomas S, Lermine A, Daudigeos‑Dubus E, Geoerger B, Orth MF, Grünewald TGP, Diaz E, Ducos B, Surdez D, Carcaboso AM, Medvedeva I, Deller T, Combaret V, Lapouble E, Pierron G, Grossetête‑Lalami S, Baulande S, Schleiermacher G, Barillot E, Rohrer H, Delattre O, Janoueix‑Lerosey I
Nat Genet. 2017 Sep. 49(9):1408-1413.

An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique.
Roche B, Gaillard B, Léger L, Pélagie‑Moutenda R, Sochacki T, Cazelles B, Ledrans M, Blateau A, Fontenille D, Etienne M, Simard F, Salathé M, Yébakima A
Sci Rep. 2017 Jul 20. 7(1):5967.

Induced-Pluripotent-Stem-Cell-Derived Primitive Macrophages Provide a Platform for Modeling Tissue-Resident Macrophage Differentiation and Function.
Takata K, Kozaki T, Lee CZW, Thion MS, Otsuka M, Lim S, Utami KH, Fidan K, Park DS, Malleret B, Chakarov S, See P, Low D, Low G, Garcia‑Miralles M, Zeng R, Zhang J, Goh CC, Gul A, Hubert S, Lee B, Chen J, Low I, Shadan NB, Lum J, Wei TS, Mok E, Kawanishi S, Kitamura Y, Larbi A, Poidinger M, Renia L, Ng LG, Wolf Y, Jung S, Önder T, Newell E, Huber T, Ashihara E, Garel S, Pouladi MA, Ginhoux F
Immunity. 2017 Jul 18. 47(1):183-198.e6.

The evolution of diatoms and their biogeochemical functions.
Benoiston AS, Ibarbalz FM, Bittner L, Guidi L, Jahn O, Dutkiewicz S, Bowler C
Philos Trans R Soc Lond B Biol Sci. 2017 Sep 5. 372(1728).

Genetics and Epigenetics of Mating Type Determination in Paramecium and Tetrahymena.
Orias E, Singh DP, Meyer E
Annu Rev Microbiol. 2017 Sep 8. 71:133-156.

Climate warming : a loss of variation in populations can accompany reproductive shifts.
Massot M, Legendre S, Fédérici P, Clobert J
Ecol Lett. 2017 Sep. 20(9):1140-1147.

Genetic identification of a hindbrain nucleus essential for innate vocalization.
Hernandez‑Miranda LR, Ruffault PL, Bouvier JC, Murray AJ, Morin‑Surun MP, Zampieri N, Cholewa‑Waclaw JB, Ey E, Brunet JF, Champagnat J, Fortin G, Birchmeier C
Proc Natl Acad Sci U S A. 2017 Jul 25. 114(30):8095-8100.

Interannual cycles of Hantaan virus outbreaks at the human-animal interface in Central China are controlled by temperature and rainfall.
Tian H, Yu P, Cazelles B, Xu L, Tan H, Yang J, Huang S, Xu B, Cai J, Ma C, Wei J, Li S, Qu J, Laine M, Wang J, Tong S, Stenseth NC, Xu B
Proc Natl Acad Sci U S A. 2017 Jul 25. 114(30):8041-8046.

Multipotent peripheral glial cells generate neuroendocrine cells of the adrenal medulla.
Furlan A, Dyachuk V, Kastriti ME, Calvo‑Enrique L, Abdo H, Hadjab S, Chontorotzea T, Akkuratova N, Usoskin D, Kamenev D, Petersen J, Sunadome K, Memic F, Marklund U, Fried K, Topilko P, Lallemend F, Kharchenko PV, Ernfors P, Adameyko I
Science. 2017 Jul 7. 357(6346).

Loss of the canonical spindle orientation function in the Pins/LGN homolog AGS3.
Saadaoui M, Konno D, Loulier K, Goiame R, Jadhav V, Mapelli M, Matsuzaki F, Morin X
EMBO Rep. 2017 Sep. 18(9):1509-1520.

Physico-Pathologic Mechanisms Involved in Neurodegeneration : Misfolded Protein-Plasma Membrane Interactions.
Shrivastava AN, Aperia A, Melki R, Triller A
Neuron. 2017 Jul 5. 95(1):33-50.

High precision detection of conserved segments from synteny blocks.
Lucas JM, Roest Crollius H
PLoS One. 2017. 12(7):e0180198.

Myosin 7 and its adaptors link cadherins to actin.
Yu IM, Planelles‑Herrero VJ, Sourigues Y, Moussaoui D, Sirkia H, Kikuti C, Stroebel D, Titus MA, Houdusse A
Nat Commun. 2017 Jun 29. 8:15864.

Toward Universal Forward Genetics : Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development.
Besnard F, Koutsovoulos G, Dieudonné S, Blaxter M, Félix MA
Genetics. 2017 Aug. 206(4):1747-1761.

The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility.
Jégu T, Veluchamy A, Ramirez‑Prado JS, Rizzi‑Paillet C, Perez M, Lhomme A, Latrasse D, Coleno E, Vicaire S, Legras S, Jost B, Rougée M, Barneche F, Bergounioux C, Crespi M, Mahfouz MM, Hirt H, Raynaud C, Benhamed M
Genome Biol. 2017 Jun 15. 18(1):114.

Cerebellar re-encoding of self-generated head movements.
Dugué GP, Tihy M, Gourévitch B, Léna C
Elife. 2017 Jun 13. 6.

Co-agonists differentially tune GluN2B-NMDA receptor trafficking at hippocampal synapses.
Ferreira JS, Papouin T, Ladépêche L, Yao A, Langlais VC, Bouchet D, Dulong J, Mothet JP, Sacchi S, Pollegioni L, Paoletti P, Oliet SHR, Groc L
Elife. 2017 Jun 9. 6.

Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana.
Snoek BL, Pavlova P, Tessadori F, Peeters AJM, Bourbousse C, Barneche F, de Jong H, Fransz PF, van Zanten M
G3 (Bethesda). 2017 Aug 7. 7(8):2519-2531.

Experimental Evolution with Caenorhabditis Nematodes.
Teotónio H, Estes S, Phillips PC, Baer CF
Genetics. 2017 Jun. 206(2):691-716.

RSAT matrix-clustering : dynamic exploration and redundancy reduction of transcription factor binding motif collections.
Castro‑Mondragon JA, Jaeger S, Thieffry D, Thomas‑Chollier M, van Helden J
Nucleic Acids Res. 2017 Jul 27. 45(13):e119.

Differentiation of Inflammation-Responsive Astrocytes from Glial Progenitors Generated from Human Induced Pluripotent Stem Cells.
Santos R, Vadodaria KC, Jaeger BN, Mei A, Lefcochilos‑Fogelquist S, Mendes APD, Erikson G, Shokhirev M, Randolph‑Moore L, Fredlender C, Dave S, Oefner R, Fitzpatrick C, Pena M, Barron JJ, Ku M, Denli AM, Kerman BE, Charnay P, Kelsoe JR, Marchetto MC, Gage FH
Stem Cell Reports. 2017 Jun 6. 8(6):1757-1769.

An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics.
Romano SA, Pérez‑Schuster V, Jouary A, Boulanger‑Weill J, Candeo A, Pietri T, Sumbre G
PLoS Comput Biol. 2017 Jun. 13(6):e1005526.

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.
Collombet S, van Oevelen C, Sardina Ortega JL, Abou‑Jaoudé W, Di Stefano B, Thomas‑Chollier M, Graf T, Thieffry D
Proc Natl Acad Sci U S A. 2017 Jun 6. 114(23):5792-5799.

Functional Interactions between Newborn and Mature Neurons Leading to Integration into Established Neuronal Circuits.
Boulanger‑Weill J, Candat V, Jouary A, Romano SA, Pérez‑Schuster V, Sumbre G
Curr Biol. 2017 Jun 19. 27(12):1707-1720.e5.

Smooth 2D manifold extraction from 3D image stack.
Shihavuddin A, Basu S, Rexhepaj E, Delestro F, Menezes N, Sigoillot SM, Del Nery E, Selimi F, Spassky N, Genovesio A
Nat Commun. 2017 May 31. 8:15554.

Epithelial cell behaviours during neurosensory organ formation.
Kapsimali M
Development. 2017 Jun 1. 144(11):1926-1936.

Heterozygous Gnal Mice Are a Novel Animal Model with Which to Study Dystonia Pathophysiology.
Pelosi A, Menardy F, Popa D, Girault JA, Hervé D
J Neurosci. 2017 Jun 28. 37(26):6253-6267.

Neuroglobin Can Prevent or Reverse Glaucomatous Progression in DBA/2J Mice.
Cwerman‑Thibault H, Lechauve C, Augustin S, Roussel D, Reboussin É, Mohammad A, Degardin‑Chicaud J, Simonutti M, Liang H, Brignole‑Baudouin F, Maron A, Debeir T, Corral‑Debrinski M
Mol Ther Methods Clin Dev. 2017 Jun 16. 5:200-220.

Unreeling the chromatin thread : a genomic perspective on organization around the periphery of the Arabidopsis nucleus.
Barneche F, Baroux C
Genome Biol. 2017 May 23. 18(1):97.

Optocontrol of glutamate receptor activity by single side-chain photoisomerization.
Klippenstein V, Hoppmann C, Ye S, Wang L, Paoletti P
Elife. 2017 May 23. 6.

Evolutionary forces affecting synonymous variations in plant genomes.
Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S
PLoS Genet. 2017 May. 13(5):e1006799.

Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome.
Dorrell RG, Gile G, McCallum G, Méheust R, Bapteste EP, Klinger CM, Brillet‑Guéguen L, Freeman KD, Richter DJ, Bowler C
Elife. 2017 May 12. 6.

vConTACT : an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria.
Bolduc B, Jang HB, Doulcier G, You ZQ, Roux S, Sullivan MB
PeerJ. 2017. 5:e3243.

The Natural Biotic Environment of Caenorhabditis elegans.
Schulenburg H, Félix MA
Genetics. 2017 May. 206(1):55-86.

The genealogical decomposition of a matrix population model with applications to the aggregation of stages.
Bienvenu F, Akçay E, Legendre S, McCandlish DM
Theor Popul Biol. 2017 Jun. 115:69-80.

A mechanistic study of helicases with magnetic traps.
Hodeib S, Raj S, Manosas M, Zhang W, Bagchi D, Ducos B, Fiorini F, Kanaan J, Le Hir H, Allemand JF, Bensimon D, Croquette V
Protein Sci. 2017 Jul. 26(7):1314-1336.

The Emergence of the Spatial Structure of Tectal Spontaneous Activity Is Independent of Visual Inputs.
Pietri T, Romano SA, Pérez‑Schuster V, Boulanger‑Weill J, Candat V, Sumbre G
Cell Rep. 2017 May 2. 19(5):939-948.

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43.
Rot G, Wang Z, Huppertz I, Modic M, Lenče T, Hallegger M, Haberman N, Curk T, von Mering C, Ule J
Cell Rep. 2017 May 2. 19(5):1056-1067.

Crop Fertilization Impacts Epidemics and Optimal Latent Period of Biotrophic Fungal Pathogens.
Précigout PA, Claessen D, Robert C
Phytopathology. 2017 Oct. 107(10):1256-1267.

Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements.
Guérin F, Arnaiz O, Boggetto N, Denby Wilkes C, Meyer E, Sperling L, Duharcourt S
BMC Genomics. 2017 Apr 26. 18(1):327.

An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains.
Ranft J, Almeida LG, Rodriguez PC, Triller A, Hakim V
PLoS Comput Biol. 2017 Apr. 13(4):e1005516.

Study of gene expression alteration in male androgenetic alopecia : evidence of predominant molecular signalling pathways.
Michel L, Reygagne P, Benech P, Jean‑Louis F, Scalvino S, Ly Ka So S, Hamidou Z, Bianovici S, Pouch J, Ducos B, Bonnet M, Bensussan A, Patatian A, Lati E, Wdzieczak‑Bakala J, Choulot JC, Loing E, Hocquaux M
Br J Dermatol. 2017 Nov. 177(5):1322-1336.

The development and functions of multiciliated epithelia.
Spassky N, Meunier A
Nat Rev Mol Cell Biol. 2017 Jul. 18(7):423-436.

Caenorhabditis elegans as a Model for Microbiome Research.
Zhang F, Berg M, Dierking K, Félix MA, Shapira M, Samuel BS, Schulenburg H
Front Microbiol. 2017. 8:485.

Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.
Boulay AC, Saubaméa B, Adam N, Chasseigneaux S, Mazaré N, Gilbert A, Bahin M, Bastianelli L, Blugeon C, Perrin S, Pouch J, Ducos B, Le Crom S, Genovesio A, Chrétien F, Declèves X, Laplanche JL, Cohen‑Salmon M
Cell Discov. 2017. 3:17005.

Accelerated body size evolution during cold climatic periods in the Cenozoic.
Clavel J, Morlon H
Proc Natl Acad Sci U S A. 2017 Apr 18. 114(16):4183-4188.

Aozan : an automated post-sequencing data-processing pipeline.
Perrin S, Firmo C, Lemoine S, Le Crom S, Jourdren L
Bioinformatics. 2017 Jul 15. 33(14):2212-2213.

Clustering coefficient and periodic orbits in flow networks.
Rodríguez‑Méndez V, Ser‑Giacomi E, Hernández‑García E
Chaos. 2017 Mar. 27(3):035803.

Introduction to Focus Issue : Complex network perspectives on flow systems.
Donner RV, Hernández‑García E, Ser‑Giacomi E
Chaos. 2017 Mar. 27(3):035601.

On the evolutionary origins of equity.
Debove S, Baumard N, André JB
PLoS One. 2017. 12(3):e0173636.

Activity patterns of serotonin neurons underlying cognitive flexibility.
Matias S, Lottem E, Dugué GP, Mainen ZF
Elife. 2017 Mar 21. 6.

The retinoblastoma homolog RBR1 mediates localization of the repair protein RAD51 to DNA lesions in Arabidopsis.
Biedermann S, Harashima H, Chen P, Heese M, Bouyer D, Sofroni K, Schnittger A
EMBO J. 2017 May 2. 36(9):1279-1297.

Epigenetic memory and cell fate reprogramming in plants.
Birnbaum KD, Roudier F
Regeneration (Oxf). 2017 Feb. 4(1):15-20.

Mutations in the Spliceosome Component CWC27 Cause Retinal Degeneration with or without Additional Developmental Anomalies.
Xu M, Xie YA, Abouzeid H, Gordon CT, Fiorentino A, Sun Z, Lehman A, Osman IS, Dharmat R, Riveiro‑Alvarez R, Bapst‑Wicht L, Babino D, Arno G, Busetto V, Zhao L, Li H, Lopez‑Martinez MA, Azevedo LF, Hubert L, Pontikos N, Eblimit A, Lorda‑Sanchez I, Kheir V, Plagnol V, Oufadem M, Soens ZT, Yang L, Bole‑Feysot C, Pfundt R, Allaman‑Pillet N, Nitschké P, Cheetham ME, Lyonnet S, Agrawal SA, Li H, Pinton G, Michaelides M, Besmond C, Li Y, Yuan Z, von Lintig J, Webster AR, Le Hir H, Stoilov P, Amiel J, Hardcastle AJ, Ayuso C, Sui R, Chen R, Allikmets R, Schorderet DF
Am J Hum Genet. 2017 Apr 6. 100(4):592-604.

Modelling plankton ecosystems in the meta-omics era. Are we ready ?
Stec KF, Caputi L, Buttigieg PL, D'Alelio D, Ibarbalz FM, Sullivan MB, Chaffron S, Bowler C, Ribera d'Alcalà M, Iudicone D
Mar Genomics. 2017 Apr. 32:1-17.

Understanding bias in DNA repair.
Strick TR, Savery NJ
Proc Natl Acad Sci U S A. 2017 Mar 14. 114(11):2791-2793.

Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate.
Dupont H, Choinier P, Roche D, Adiba S, Sookdeb M, Branger C, Denamur E, Mammeri H
Antimicrob Agents Chemother. 2017 May. 61(5).

Utilization of interferometric light microscopy for the rapid analysis of virus abundance in a river.
Roose‑Amsaleg C, Fedala Y, Vénien‑Bryan C, Garnier J, Boccara AC, Boccara M
Res Microbiol. 2017 Jun. 168(5):413-418.

Molecular Mechanisms of Bipolar Disorder : Progress Made and Future Challenges.
Kim Y, Santos R, Gage FH, Marchetto MC
Front Cell Neurosci. 2017. 11:30.

Neurons derived from patients with bipolar disorder divide into intrinsically different sub-populations of neurons, predicting the patients' responsiveness to lithium.
Stern S, Santos R, Marchetto MC, Mendes AP, Rouleau GA, Biesmans S, Wang QW, Yao J, Charnay P, Bang AG, Alda M, Gage FH
Mol Psychiatry. 2017 Feb 28.

Oxidation of F-actin controls the terminal steps of cytokinesis.
Frémont S, Hammich H, Bai J, Wioland H, Klinkert K, Rocancourt M, Kikuti C, Stroebel D, Romet‑Lemonne G, Pylypenko O, Houdusse A, Echard A
Nat Commun. 2017 Feb 23. 8:14528.

Recent progress in diatom genomics and epigenomics.
Tirichine L, Rastogi A, Bowler C
Curr Opin Plant Biol. 2017 Apr. 36:46-55.

Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development.
Rosspopoff O, Chelysheva L, Saffar J, Lecorgne L, Gey D, Caillieux E, Colot V, Roudier F, Hilson P, Berthomé R, Da Costa M, Rech P
Development. 2017 Apr 1. 144(7):1187-1200.

Visualization of Chromatin Decompaction and Break Site Extrusion as Predicted by Statistical Polymer Modeling of Single-Locus Trajectories.
Amitai A, Seeber A, Gasser SM, Holcman D
Cell Rep. 2017 Jan 31. 18(5):1200-1214.

A noninvasive optical approach for assessing chloride extrusion activity of the K-Cl cotransporter KCC2 in neuronal cells.
Ludwig A, Rivera C, Uvarov P
BMC Neurosci. 2017 Jan 31. 18(1):23.

The hypothalamic NPVF circuit modulates ventral raphe activity during nociception.
Madelaine R, Lovett‑Barron M, Halluin C, Andalman AS, Liang J, Skariah GM, Leung LC, Burns VM, Mourrain P
Sci Rep. 2017 Jan 31. 7:41528.

Differential Routing of Mindbomb1 via Centriolar Satellites Regulates Asymmetric Divisions of Neural Progenitors.
Tozer S, Baek C, Fischer E, Goiame R, Morin X
Neuron. 2017 Feb 8. 93(3):542-551.e4.

Insights into the design and interpretation of iCLIP experiments.
Haberman N, Huppertz I, Attig J, König J, Wang Z, Hauer C, Hentze MW, Kulozik AE, Le Hir H, Curk T, Sibley CR, Zarnack K, Ule J
Genome Biol. 2017 Jan 16. 18(1):7.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV
Nature. 2017 Jan 26. 541(7638):536-540.

The crystal structure of the 5΄ functional domain of the transcription riboregulator 7SK.
Martinez‑Zapien D, Legrand P, McEwen AG, Proux F, Cragnolini T, Pasquali S, Dock‑Bregeon AC
Nucleic Acids Res. 2017 Apr 7. 45(6):3568-3579.

IGF-1 Induces GHRH Neuronal Axon Elongation during Early Postnatal Life in Mice.
Decourtye L, Mire E, Clemessy M, Heurtier V, Ledent T, Robinson IC, Mollard P, Epelbaum J, Meaney MJ, Garel S, Le Bouc Y, Kappeler L
PLoS One. 2017. 12(1):e0170083.

Histone degradation in response to DNA damage enhances chromatin dynamics and recombination rates.
Hauer MH, Seeber A, Singh V, Thierry R, Sack R, Amitai A, Kryzhanovska M, Eglinger J, Holcman D, Owen‑Hughes T, Gasser SM
Nat Struct Mol Biol. 2017 Feb. 24(2):99-107.

Early Commissural Diencephalic Neurons Control Habenular Axon Extension and Targeting.
Beretta CA, Dross N, Guglielmi L, Bankhead P, Soulika M, Gutierrez‑Triana JA, Paolini A, Poggi L, Falk J, Ryu S, Kapsimali M, Engel U, Carl M
Curr Biol. 2017 Jan 23. 27(2):270-278.

Proteomic analysis of the Rett syndrome experimental model mecp2^Q63X mutant zebrafish.
Cortelazzo A, Pietri T, De Felice C, Leoncini S, Guerranti R, Signorini C, Timperio AM, Zolla L, Ciccoli L, Hayek J
J Proteomics. 2017 Feb 10. 154:128-133.

Preparation of DNA Substrates and Functionalized Glass Surfaces for Correlative Nanomanipulation and Colocalization (NanoCOSM) of Single Molecules.
Duboc C, Fan J, Graves ET, Strick TR
Methods Enzymol. 2017. 582:275-296.

Early born neurons are abnormally positioned in the doublecortin knockout hippocampus.
Khalaf‑Nazzal R, Stouffer MA, Olaso R, Muresan L, Roumegous A, Lavilla V, Carpentier W, Moutkine I, Dumont S, Albaud B, Cagnard N, Roest Crollius H, Francis F
Hum Mol Genet. 2017 Jan 1. 26(1):90-108.

A Unifying Comparative Phylogenetic Framework Including Traits Coevolving Across Interacting Lineages.
Manceau M, Lambert A, Morlon H
Syst Biol. 2017 Jul 1. 66(4):551-568.

Uncovering Higher-Taxon Diversification Dynamics from Clade Age and Species-Richness Data.
Sánchez‑Reyes LL, Morlon H, Magallón S
Syst Biol. 2017 May 1. 66(3):367-378.

Whole-GUV patch-clamping.
Garten M, Mosgaard LD, Bornschlögl T, Dieudonné S, Bassereau P, Toombes GE
Proc Natl Acad Sci U S A. 2017 Jan 10. 114(2):328-333.

Physiology : Mechanosensor of lung inflation identified.
Goridis C
Nature. 2017 Jan 12. 541(7636):165-166.

mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis.
Foerster P, Daclin M, Asm S, Faucourt M, Boletta A, Genovesio A, Spassky N
Development. 2017 Jan 15. 144(2):201-210.

Heritable expansion of the genetic code in mouse and zebrafish.
Chen Y, Ma J, Lu W, Tian M, Thauvin M, Yuan C, Volovitch M, Wang Q, Holst J, Liu M, Vriz S, Ye S, Wang L, Li D
Cell Res. 2017 Feb. 27(2):294-297.

Strain-specific impact of the high-pathogenicity island on virulence in extra-intestinal pathogenic Escherichia coli.
Smati M, Magistro G, Adiba S, Wieser A, Picard B, Schubert S, Denamur E
Int J Med Microbiol. 2017 Jan. 307(1):44-56.

A Transcription Factor Pulse Can Prime Chromatin for Heritable Transcriptional Memory.
Iberg‑Badeaux A, Collombet S, Laurent B, van Oevelen C, Chin KK, Thieffry D, Graf T, Shi Y
Mol Cell Biol. 2017 Feb 15. 37(4).

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.
Love MI, Huska MR, Jurk M, Schöpflin R, Starick SR, Schwahn K, Cooper SB, Yamamoto KR, Thomas‑Chollier M, Vingron M, Meijsing SH
Nucleic Acids Res. 2017 Feb 28. 45(4):1805-1819.

Whole genome DNA methylation : beyond genes silencing.
Tirado‑Magallanes R, Rebbani K, Lim R, Pradhan S, Benoukraf T
Oncotarget. 2017 Jan 17. 8(3):5629-5637.

A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications.
Arrigoni R, Vacherie B, Benzoni F, Stefani F, Karsenti E, Jaillon O, Not F, Nunes F, Payri C, Wincker P, Barbe V
Mol Ecol Resour. 2017 Sep. 17(5):1054-1071.

Decreased Anxiety-Related Behaviour but Apparently Unperturbed NUMB Function in Ligand of NUMB Protein-X (LNX) 1/2 Double Knockout Mice.
Lenihan JA, Saha O, Heimer‑McGinn V, Cryan JF, Feng G, Young PW
Mol Neurobiol. 2017 Dec. 54(10):8090-8109.

Progressive and Biased Divergent Evolution Underpins the Origin and Diversification of Peridinin Dinoflagellate Plastids.
Dorrell RG, Klinger CM, Newby RJ, Butterfield ER, Richardson E, Dacks JB, Howe CJ, Nisbet ER, Bowler C
Mol Biol Evol. 2017 Feb 1. 34(2):361-379.

Analysis of Small RNA Populations Using Hybridization to DNA Tiling Arrays.
Boccara M, Sarazin A, Billoud B, Bulski A, Chapell L, Baulcombe D, Colot V
Methods Mol Biol. 2017. 1456:127-139.

Sleep-Dependent Structural Synaptic Plasticity of Inhibitory Synapses in the Dendrites of Hypocretin/Orexin Neurons.
Elbaz I, Zada D, Tovin A, Braun T, Lerer‑Goldshtein T, Wang G, Mourrain P, Appelbaum L
Mol Neurobiol. 2017 Oct. 54(8):6581-6597.

BRD4 localization to lineage-specific enhancers is associated with a distinct transcription factor repertoire.
Najafova Z, Tirado‑Magallanes R, Subramaniam M, Hossan T, Schmidt G, Nagarajan S, Baumgart SJ, Mishra VK, Bedi U, Hesse E, Knapp S, Hawse JR, Johnsen SA
Nucleic Acids Res. 2017 Jan 9. 45(1):127-141.

GABAergic Microcircuits in Alzheimer's Disease Models.
Villette V, Dutar P
Curr Alzheimer Res. 2017. 14(1):30-39.

Mammalian microRNAs and long noncoding RNAs in the host-bacterial pathogen crosstalk.
Duval M, Cossart P, Lebreton A
Semin Cell Dev Biol. 2017 May. 65:11-19.

Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms.
Bussard A, Corre E, Hubas C, Duvernois‑Berthet E, Le Corguillé G, Jourdren L, Coulpier F, Claquin P, Lopez PJ
Environ Microbiol. 2017 Mar. 19(3):909-925.

RNA- and protein-mediated control of Listeria monocytogenes virulence gene expression.
Lebreton A, Cossart P
RNA Biol. 2017 May 4. 14(5):460-470.

Microglia control the glycinergic but not the GABAergic synapses via prostaglandin E2 in the spinal cord.
Cantaut‑Belarif Y, Antri M, Pizzarelli R, Colasse S, Vaccari I, Soares S, Renner M, Dallel R, Triller A, Bessis A
J Cell Biol. 2017 Sep 4. 216(9):2979-2989.

History of research on C. elegans and other free-living nematodes as model organisms.
Nigon VM, Félix MA
WormBook. 2017 Sep 7:1-84.

2016

Frédérique Godfroid — 2016-02-15T15:44:01Z

IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans.
Alzaid F, Lagadec F, Albuquerque M, Ballaire R, Orliaguet L, Hainault I, Blugeon C, Lemoine S, Lehuen A, Saliba DG, Udalova IA, Paradis V, Foufelle F, Venteclef N
JCI Insight. 2016 Dec 8. 1(20):e88689.

A Large Collection of Novel Nematode-Infecting Microsporidia and Their Diverse Interactions with Caenorhabditis elegans and Other Related Nematodes.
Zhang G, Sachse M, Prevost MC, Luallen RJ, Troemel ER, Félix MA
PLoS Pathog. 2016 Dec. 12(12):e1006093.

Structure in the variability of the basic reproductive number (R₀) for Zika epidemics in the Pacific islands.
Champagne C, Salthouse DG, Paul R, Cao‑Lormeau VM, Roche B, Cazelles B
Elife. 2016 Nov 29. 5.

1926-2016 : 90 Years of listeriology.
Lebreton A, Stavru F, Brisse S, Cossart P
Microbes Infect. 2016 Dec. 18(12):711-723.

Extreme Diversity of Diplonemid Eukaryotes in the Ocean.
Flegontova O, Flegontov P, Malviya S, Audic S, Wincker P, de Vargas C, Bowler C, Lukeš J, Horák A
Curr Biol. 2016 Nov 21. 26(22):3060-3065.

A radial map of multi-whisker correlation selectivity in the rat barrel cortex.
Estebanez L, Bertherat J, Shulz DE, Bourdieu L, Léger JF
Nat Commun. 2016 Nov 21. 7:13528.

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution.
Attig J, Ruiz de Los Mozos I, Haberman N, Wang Z, Emmett W, Zarnack K, König J, Ule J
Elife. 2016 Nov 18. 5.

The sacral autonomic outflow is sympathetic.
Espinosa‑Medina I, Saha O, Boismoreau F, Chettouh Z, Rossi F, Richardson WD, Brunet JF
Science. 2016 Nov 18. 354(6314):893-897.

Solution structure of the 5'-terminal hairpin of the 7SK small nuclear RNA.
Bourbigot S, Dock‑Bregeon AC, Eberling P, Coutant J, Kieffer B, Lebars I
RNA. 2016 Dec. 22(12):1844-1858.

Actin Is Crucial for All Kinetically Distinguishable Forms of Endocytosis at Synapses.
Wu XS, Lee SH, Sheng J, Zhang Z, Zhao WD, Wang D, Jin Y, Charnay P, Ervasti JM, Wu LG
Neuron. 2016 Dec 7. 92(5):1020-1035.

Live Monitoring of Blastemal Cell Contributions during Appendage Regeneration.
Tornini VA, Puliafito A, Slota LA, Thompson JD, Nachtrab G, Kaushik AL, Kapsimali M, Primo L, Di Talia S, Poss KD
Curr Biol. 2016 Nov 21. 26(22):2981-2991.

The effects of archipelago spatial structure on island diversity and endemism : predictions from a spatially-structured neutral model.
Gascuel F, Laroche F, Bonnet‑Lebrun AS, Rodrigues AS
Evolution. 2016 Nov. 70(11):2657-2666.

An evolutionary conserved Hexim1 peptide binds to the Cdk9 catalytic site to inhibit P-TEFb.
Kobbi L, Demey‑Thomas E, Braye F, Proux F, Kolesnikova O, Vinh J, Poterszman A, Bensaude O
Proc Natl Acad Sci U S A. 2016 Oct 25.

Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase.
Lerner E, Chung S, Allen BL, Wang S, Lee J, Lu SW, Grimaud LW, Ingargiola A, Michalet X, Alhadid Y, Borukhov S, Strick TR, Taatjes DJ, Weiss S
Proc Natl Acad Sci U S A. 2016 Oct 25. 113(43):E6562-E6571.

Sub-synaptic, multiplexed analysis of proteins reveals Fragile X related protein 2 is mislocalized in Fmr1 KO synapses.
Wang GX, Smith SJ, Mourrain P
Elife. 2016 Oct 22. 5.

Wireless inertial measurement of head kinematics in freely-moving rats.
Pasquet MO, Tihy M, Gourgeon A, Pompili MN, Godsil BP, Léna C, Dugué GP
Sci Rep. 2016 Oct 21. 6:35689.

Mechanisms and functional roles of glutamatergic synapse diversity in a cerebellar circuit.
Zampini V, Liu JK, Diana MA, Maldonado PP, Brunel N, Dieudonné S
Elife. 2016 Sep 19. 5.

Sustained Rhythmic Brain Activity Underlies Visual Motion Perception in Zebrafish.
Pérez‑Schuster V, Kulkarni A, Nouvian M, Romano SA, Lygdas K, Jouary A, Dipoppa M, Pietri T, Haudrechy M, Candat V, Boulanger‑Weill J, Hakim V, Sumbre G
Cell Rep. 2016 Oct 18. 17(4):1098-1112.

Reallocation of Olfactory Cajal-Retzius Cells Shapes Neocortex Architecture.
de Frutos CA, Bouvier G, Arai Y, Thion MS, Lokmane L, Keita M, Garcia‑Dominguez M, Charnay P, Hirata T, Riethmacher D, Grove EA, Tissir F, Casado M, Pierani A, Garel S
Neuron. 2016 Oct 19. 92(2):435-448.

Single-molecule, antibody-free fluorescent visualisation of replication tracts along barcoded DNA molecules.
De Carli F, Gaggioli V, Millot GA, Hyrien O
Int J Dev Biol. 2016. 60(7-8-9):297-304.

Plant Transgenerational Epigenetics.
Quadrana L, Colot V
Annu Rev Genet. 2016 Nov 23. 50:467-491.

Into the Andes : multiple independent colonizations drive montane diversity in the Neotropical clearwing butterflies Godyridina.
Chazot N, Willmott KR, Condamine FL, De‑Silva DL, Freitas AV, Lamas G, Morlon H, Giraldo CE, Jiggins CD, Joron M, Mallet J, Uribe S, Elias M
Mol Ecol. 2016 Nov. 25(22):5765-5784.

Allosteric regulation in NMDA receptors revealed by the genetically encoded photo-cross-linkers.
Tian M, Ye S
Sci Rep. 2016 Oct 7. 6:34751.

Full-field interferometry for counting and differentiating aquatic biotic nanoparticles : from laboratory to Tara Oceans.
Boccara M, Fedala Y, Bryan CV, Bailly‑Bechet M, Bowler C, Boccara AC
Biomed Opt Express. 2016 Sep 1. 7(9):3736-3746.

A 2D virtual reality system for visual goal-driven navigation in zebrafish larvae.
Jouary A, Haudrechy M, Candelier R, Sumbre G
Sci Rep. 2016 Sep 23. 6:34015.

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.
Roux S, Brum JR, Dutilh BE, Sunagawa S, Duhaime MB, Loy A, Poulos BT, Solonenko N, Lara E, Poulain J, Pesant S, Kandels‑Lewis S, Dimier C, Picheral M, Searson S, Cruaud C, Alberti A, Duarte CM, Gasol JM, Vaqué D, Bork P, Acinas SG, Wincker P, Sullivan MB
Nature. 2016 Sep 29. 537(7622):689-693.

Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
de Lucas M, Pu L, Turco G, Gaudinier A, Morao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier F, Brady SM
Plant Cell. 2016 Oct. 28(10):2616-2631.

How MCM loading and spreading specify eukaryotic DNA replication initiation sites.
Hyrien O
F1000Res. 2016. 5.

Early-life sexual segregation : ontogeny of isotopic niche differentiation in the Antarctic fur seal.
Kernaléguen L, Arnould JP, Guinet C, Cazelles B, Richard P, Cherel Y
Sci Rep. 2016 Sep 13. 6:33211.

Formal derivation of qualitative dynamical models from biochemical networks.
Abou‑Jaoudé W, Thieffry D, Feret J
Biosystems. 2016 Nov. 149:70-112.

Au-delà du cerveau - La huntingtine dans les cancers du sein.
Thion MS, Humbert S
Med Sci (Paris). 2016 8-9. 32(8-9):674-7.

Biased Allostery.
Edelstein SJ, Changeux JP
Biophys J. 2016 Sep 6. 111(5):902-8.

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes.
Mbodj A, Gustafson EH, Ciglar L, Junion G, Gonzalez A, Girardot C, Perrin L, Furlong EE, Thieffry D
PLoS Comput Biol. 2016 Sep. 12(9):e1005073.

Evolution of New cis-Regulatory Motifs Required for Cell-Specific Gene Expression in Caenorhabditis.
Barkoulas M, Vargas Velazquez AM, Peluffo AE, Félix MA
PLoS Genet. 2016 Sep. 12(9):e1006278.

Logical model specification aided by model-checking techniques : application to the mammalian cell cycle regulation.
Traynard P, Fauré A, Fages F, Thieffry D
Bioinformatics. 2016 Sep 1. 32(17):i772-i780.

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.
Schöne S, Jurk M, Helabad MB, Dror I, Lebars I, Kieffer B, Imhof P, Rohs R, Vingron M, Thomas‑Chollier M, Meijsing SH
Nat Commun. 2016 Sep 1. 7:12621.

Multiciliated Cells in Animals.
Meunier A, Azimzadeh J
Cold Spring Harb Perspect Biol. 2016 Dec 1. 8(12).

DNA DAMAGE BINDING PROTEIN 2 (DDB2) Shapes the DNA Methylation Landscape.
Schalk C, Drevensek S, Kramdi A, Kassam M, Ahmed I, Cognat V, Graindorge S, Bergdoll M, Baumberger N, Heintz D, Bowler C, Genschik P, Barneche F, Colot V, Molinier J
Plant Cell. 2016 Aug 16.

Emerging concepts in chromatin-level regulation of plant cell differentiation : timing, counting, sensing and maintaining.
Morao AK, Bouyer D, Roudier F
Curr Opin Plant Biol. 2016 Dec. 34:27-34.

Complex heterochrony underlies the evolution of Caenorhabditis elegans hermaphrodite sex allocation.
Poullet N, Vielle A, Gimond C, Carvalho S, Teotónio H, Braendle C
Evolution. 2016 Oct. 70(10):2357-2369.

Phospho-dependent Accumulation of GABABRs at Presynaptic Terminals after NMDAR Activation.
Hannan S, Gerrow K, Triller A, Smart TG
Cell Rep. 2016 Aug 16. 16(7):1962-73.

DNA Methylation and Demethylation in Plant Immunity.
Deleris A, Halter T, Navarro L
Annu Rev Phytopathol. 2016 Aug 4. 54:579-603.

A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting.
Tantale K, Mueller F, Kozulic‑Pirher A, Lesne A, Victor JM, Robert MC, Capozi S, Chouaib R, Bäcker V, Mateos‑Langerak J, Darzacq X, Zimmer C, Basyuk E, Bertrand E
Nat Commun. 2016 Jul 27. 7:12248.

Deciphering and modifying LAFL transcriptional regulatory network in seed for improving yield and quality of storage compounds.
Fatihi A, Boulard C, Bouyer D, Baud S, Dubreucq B, Lepiniec L
Plant Sci. 2016 Sep. 250:198-204.

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length.
Cook DE, Zdraljevic S, Tanny RE, Seo B, Riccardi DD, Noble LM, Rockman MV, Alkema MJ, Braendle C, Kammenga JE, Wang J, Kruglyak L, Félix MA, Lee J, Andersen EC
Genetics. 2016 Sep. 204(1):371-83.

Regulation of mitotic spindle orientation : an integrated view.
di Pietro F, Echard A, Morin X
EMBO Rep. 2016 Aug. 17(8):1106-30.

Molecular signatures of neural connectivity in the olfactory cortex.
Diodato A, Ruinart de Brimont M, Yim YS, Derian N, Perrin S, Pouch J, Klatzmann D, Garel S, Choi GB, Fleischmann A
Nat Commun. 2016 Jul 18. 7:12238.

SRGAP2 and Its Human-Specific Paralog Co-Regulate the Development of Excitatory and Inhibitory Synapses.
Fossati M, Pizzarelli R, Schmidt ER, Kupferman JV, Stroebel D, Polleux F, Charrier C
Neuron. 2016 Jul 20. 91(2):356-69.

PhytoCRISP-Ex : a web-based and stand-alone application to find specific target sequences for CRISPR/CAS editing.
Rastogi A, Murik O, Bowler C, Tirichine L
BMC Bioinformatics. 2016 Jul 1. 17(1):261.

Discovery of a Natural Microsporidian Pathogen with a Broad Tissue Tropism in Caenorhabditis elegans.
Luallen RJ, Reinke AW, Tong L, Botts MR, Félix MA, Troemel ER
PLoS Pathog. 2016 Jun. 12(6):e1005724.

Cyanobacterial ultrastructure in light of genomic sequence data.
Gonzalez‑Esquer CR, Smarda J, Rippka R, Axen SD, Guglielmi G, Gugger M, Kerfeld CA
Photosynth Res. 2016 Aug. 129(2):147-57.

Surface water areas significantly impacted 2014 dengue outbreaks in Guangzhou, China.
Tian H, Huang S, Zhou S, Bi P, Yang Z, Li X, Chen L, Cazelles B, Yang J, Luo L, Jing Q, Yuan W, Pei Y, Sun Z, Yue T, Kwan MP, Liu Q, Wang M, Tong S, Brownstein JS, Xu B
Environ Res. 2016 Oct. 150:299-305.

Counting numbers of synaptic proteins : absolute quantification and single molecule imaging techniques.
Patrizio A, Specht CG
Neurophotonics. 2016 Oct. 3(4):041805.

Caenorhabditis elegans responses to bacteria from its natural habitats.
Samuel BS, Rowedder H, Braendle C, Félix MA, Ruvkun G
Proc Natl Acad Sci U S A. 2016 Jul 5. 113(27):E3941-9.

Logical Modeling and Dynamical Analysis of Cellular Networks.
Abou‑Jaoudé W, Traynard P, Monteiro PT, Saez‑Rodriguez J, Helikar T, Thieffry D, Chaouiya C
Front Genet. 2016. 7:94.

Anchor cell signaling and vulval precursor cell positioning establish a reproducible spatial context during C. elegans vulval induction.
Grimbert S, Tietze K, Barkoulas M, Sternberg PW, Félix MA, Braendle C
Dev Biol. 2016 Aug 1. 416(1):123-135.

Altered zinc sensitivity of NMDA receptors harboring clinically-relevant mutations.
Serraz B, Grand T, Paoletti P
Neuropharmacology. 2016 Oct. 109:196-204.

The Arabidopsis thaliana mobilome and its impact at the species level.
Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V
Elife. 2016 Jun 3. 5.

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata.
Merhej J, Thiebaut A, Blugeon C, Pouch J, Ali Chaouche Mel A, Camadro JM, Le Crom S, Lelandais G, Devaux F
Front Microbiol. 2016. 7:645.

Estimating planktonic diversity through spatial dominance patterns in a model ocean.
Soccodato A, d'Ovidio F, Lévy M, Jahn O, Follows MJ, De Monte S
Mar Genomics. 2016 Oct. 29:9-17.

Analyzing In Vivo Cell Migration using Cell Transplantations and Time-lapse Imaging in Zebrafish Embryos.
Giger FA, Dumortier JG, David NB
J Vis Exp. 2016 Apr 29. (110).

The native microbiome of the nematode Caenorhabditis elegans : gateway to a new host-microbiome model.
Dirksen P, Marsh SA, Braker I, Heitland N, Wagner S, Nakad R, Mader S, Petersen C, Kowallik V, Rosenstiel P, Félix MA, Schulenburg H
BMC Biol. 2016 May 9. 14:38.

Hydrogen peroxide (H2O2) controls axon pathfinding during zebrafish development.
Gauron C, Meda F, Dupont E, Albadri S, Quenech'Du N, Ipendey E, Volovitch M, Del Bene F, Joliot A, Rampon C, Vriz S
Dev Biol. 2016 Jun 15. 414(2):133-41.

Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation.
Hossan T, Nagarajan S, Baumgart SJ, Xie W, Magallanes RT, Hernandez C, Chiaroni PM, Indenbirken D, Spitzner M, Thomas‑Chollier M, Grade M, Thieffry D, Grundhoff A, Wegwitz F, Johnsen SA
Stem Cells. 2016 May. 34(5):1369-76.

Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton.
Lelandais G, Scheiber I, Paz‑Yepes J, Lozano JC, Botebol H, Pilátová J, Žárský V, Léger T, Blaiseau PL, Bowler C, Bouget FY, Camadro JM, Sutak R, Lesuisse E
BMC Genomics. 2016 May 3. 17:319.

Coopération entre mutation somatique et variant génétique de susceptibilité dans le sarcome d'Ewing.
Grünewald TG, Gilardi‑Hebenstreit P, Charnay P, Delattre O
Med Sci (Paris). 2016 Apr. 32(4):323-6.

Diversity in cell motility reveals the dynamic nature of the formation of zebrafish taste sensory organs.
Soulika M, Kaushik AL, Mathieu B, Lourenço R, Komisarczuk AZ, Romano SA, Jouary A, Lardennois A, Tissot N, Okada S, Abe K, Becker TS, Kapsimali M
Development. 2016 Jun 1. 143(11):2012-24.

Detection and tracking of overlapping cell nuclei for large scale mitosis analyses.
Li Y, Rose F, di Pietro F, Morin X, Genovesio A
BMC Bioinformatics. 2016 Apr 26. 17(1):183.

CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis.
Zitouni S, Francia ME, Leal F, Montenegro Gouveia S, Nabais C, Duarte P, Gilberto S, Brito D, Moyer T, Kandels‑Lewis S, Ohta M, Kitagawa D, Holland AJ, Karsenti E, Lorca T, Lince‑Faria M, Bettencourt‑Dias M
Curr Biol. 2016 May 9. 26(9):1127-37.

Burst-Dependent Bidirectional Plasticity in the Cerebellum Is Driven by Presynaptic NMDA Receptors.
Bouvier G, Higgins D, Spolidoro M, Carrel D, Mathieu B, Léna C, Dieudonné S, Barbour B, Brunel N, Casado M
Cell Rep. 2016 Apr 5. 15(1):104-16.

Erratum to : Understanding Brassicaceae evolution through ancestral genome reconstruction.
Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Roest Crollius H, Salse J
Genome Biol. 2016 Apr 4. 17:64.

Simple calibration of TIR field depth using the supercoiling response of DNA.
Duboc C, Graves ET, Strick TR
Methods. 2016 Aug 1. 105:56-61.

Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains.
Tiana G, Amitai A, Pollex T, Piolot T, Holcman D, Heard E, Giorgetti L
Biophys J. 2016 Mar 29. 110(6):1234-45.

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements.
Telorac J, Prykhozhij SV, Schöne S, Meierhofer D, Sauer S, Thomas‑Chollier M, Meijsing SH
Nucleic Acids Res. 2016 Jul 27. 44(13):6142-56.

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton.
Cornejo‑Castillo FM, Cabello AM, Salazar G, Sánchez‑Baracaldo P, Lima‑Mendez G, Hingamp P, Alberti A, Sunagawa S, Bork P, de Vargas C, Raes J, Bowler C, Wincker P, Zehr JP, Gasol JM, Massana R, Acinas SG
Nat Commun. 2016 Mar 22. 7:11071.

C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4.
Di Stefano B, Collombet S, Jakobsen JS, Wierer M, Sardina JL, Lackner A, Stadhouders R, Segura‑Morales C, Francesconi M, Limone F, Mann M, Porse B, Thieffry D, Graf T
Nat Cell Biol. 2016 Apr. 18(4):371-81.

Estimating the Effect of Competition on Trait Evolution Using Maximum Likelihood Inference.
Drury J, Clavel J, Manceau M, Morlon H
Syst Biol. 2016 Jul. 65(4):700-10.

Data in support of the identification of neuronal and astrocyte proteins interacting with extracellularly applied oligomeric and fibrillar α-synuclein assemblies by mass spectrometry.
Shrivastava AN, Redeker V, Fritz N, Pieri L, Almeida LG, Spolidoro M, Liebmann T, Bousset L, Renner M, Léna C, Aperia A, Melki R, Triller A
Data Brief. 2016 Jun. 7:221-8.

Neurodegeneration, Neurogenesis, and Oxidative Stress 2015.
Santos R, Bulteau AL, Gomes CM
Oxid Med Cell Longev. 2016. 2016:7632025.

Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.
Fortunato AE, Jaubert M, Enomoto G, Bouly JP, Raniello R, Thaler M, Malviya S, Bernardes JS, Rappaport F, Gentili B, Huysman MJ, Carbone A, Bowler C, d'Alcalà MR, Ikeuchi M, Falciatore A
Plant Cell. 2016 Mar. 28(3):616-28.

Deciphering DNA replication dynamics in eukaryotic cell populations in relation with their averaged chromatin conformations.
Goldar A, Arneodo A, Audit B, Argoul F, Rappailles A, Guilbaud G, Petryk N, Kahli M, Hyrien O
Sci Rep. 2016 Mar 3. 6:22469.

Insights into global diatom distribution and diversity in the world's ocean.
Malviya S, Scalco E, Audic S, Vincent F, Veluchamy A, Poulain J, Wincker P, Iudicone D, de Vargas C, Bittner L, Zingone A, Bowler C
Proc Natl Acad Sci U S A. 2016 Mar 15. 113(11):E1516-25.

Centriole continuity : out with the new, in with the old.
Meunier A, Spassky N
Curr Opin Cell Biol. 2016 Feb. 38:60-7.

Time-invariant feed-forward inhibition of Purkinje cells in the cerebellar cortex in vivo.
Blot A, de Solages C, Ostojic S, Szapiro G, Hakim V, Léna C
J Physiol. 2016 May 15. 594(10):2729-49.

A Novel Binding Mode Reveals Two Distinct Classes of NMDA Receptor GluN2B-selective Antagonists.
Stroebel D, Buhl DL, Knafels JD, Chanda PK, Green M, Sciabola S, Mony L, Paoletti P, Pandit J
Mol Pharmacol. 2016 May. 89(5):541-51.

Pathogens trigger top-down climate forcing on ecosystem dynamics.
Edeline E, Groth A, Cazelles B, Claessen D, Winfield IJ, Ohlberger J, Asbjørn Vøllestad L, Stenseth NC, Ghil M
Oecologia. 2016 Jun. 181(2):519-32.

Adaptation to Temporally Fluctuating Environments by the Evolution of Maternal Effects.
Dey S, Proulx SR, Teotónio H
PLoS Biol. 2016 Feb. 14(2):e1002388.

Metals and Neuronal Metal Binding Proteins Implicated in Alzheimer's Disease.
Cristóvão JS, Santos R, Gomes CM
Oxid Med Cell Longev. 2016. 2016:9812178.

Positive Allosteric Modulators of GluN2A-Containing NMDARs with Distinct Modes of Action and Impacts on Circuit Function.
Hackos DH, Lupardus PJ, Grand T, Chen Y, Wang TM, Reynen P, Gustafson A, Wallweber HJ, Volgraf M, Sellers BD, Schwarz JB, Paoletti P, Sheng M, Zhou Q, Hanson JE
Neuron. 2016 Mar 2. 89(5):983-99.

Plankton networks driving carbon export in the oligotrophic ocean.
Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JCI, Malviya S, Sunagawa S, Dimier C, Kandels‑Lewis S, Picheral M, Poulain J, Searson S, Stemmann L, Not F, Hingamp P, Speich S, Follows M, Karp‑Boss L, Boss E, Ogata H, Pesant S, Weissenbach J, Wincker P, Acinas SG, Bork P, de Vargas C, Iudicone D, Sullivan MB, Raes J, Karsenti E, Bowler C, Gorsky G
Nature. 2016 Apr 28. 532(7600):465-470.

A CURLY LEAF homologue controls both vegetative and reproductive development of tomato plants.
Boureau L, How‑Kit A, Teyssier E, Drevensek S, Rainieri M, Joubès J, Stammitti L, Pribat A, Bowler C, Hong Y, Gallusci P
Plant Mol Biol. 2016 Mar. 90(4-5):485-501.

The Role of Synaptopodin in Membrane Protein Diffusion in the Dendritic Spine Neck.
Wang L, Dumoulin A, Renner M, Triller A, Specht CG
PLoS One. 2016. 11(2):e0148310.

Replication landscape of the human genome.
Petryk N, Kahli M, d'Aubenton‑Carafa Y, Jaszczyszyn Y, Shen Y, Silvain M, Thermes C, Chen CL, Hyrien O
Nat Commun. 2016 Jan 11. 7:10208.

Small fluorescence-activating and absorption-shifting tag for tunable protein imaging in vivo.
Plamont MA, Billon‑Denis E, Maurin S, Gauron C, Pimenta FM, Specht CG, Shi J, Quérard J, Pan B, Rossignol J, Moncoq K, Morellet N, Volovitch M, Lescop E, Chen Y, Triller A, Vriz S, Le Saux T, Jullien L, Gautier A
Proc Natl Acad Sci U S A. 2016 Jan 19. 113(3):497-502.

Search for a small egg by spermatozoa in restricted geometries.
Yang J, Kupka I, Schuss Z, Holcman D
J Math Biol. 2016 Aug. 73(2):423-46.

Prss56, a novel marker of adult neurogenesis in the mouse brain.
Jourdon A, Gresset A, Spassky N, Charnay P, Topilko P, Santos R
Brain Struct Funct. 2016 Dec. 221(9):4411-4427.

Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations.
Cruz de Carvalho MH, Sun HX, Bowler C, Chua NH
New Phytol. 2016 Apr. 210(2):497-510.

The exon junction complex as a node of post-transcriptional networks.
Le Hir H, Saulière J, Wang Z
Nat Rev Mol Cell Biol. 2016 Jan. 17(1):41-54.

Master regulators in primary skin fibroblast fate reprogramming in a human ex vivo model of chronic wounds.
Noizet M, Lagoutte E, Gratigny M, Bouschbacher M, Lazareth I, Roest Crollius H, Darzacq X, Dugast‑Darzacq C
Wound Repair Regen. 2016 Mar. 24(2):247-62.

A versatile Multisite Gateway-compatible promoter and transgenic line collection for cell type-specific functional genomics in Arabidopsis.
Marquès‑Bueno MDM, Morao AK, Cayrel A, Platre MP, Barberon M, Caillieux E, Colot V, Jaillais Y, Roudier F, Vert G
Plant J. 2016 Jan. 85(2):320-333.

Characterizing and Comparing Phylogenies from their Laplacian Spectrum.
Lewitus E, Morlon H
Syst Biol. 2016 May. 65(3):495-507.

Contribution of postsynaptic T-type calcium channels to parallel fibre-Purkinje cell synaptic responses.
Ly R, Bouvier G, Szapiro G, Prosser HM, Randall AD, Kano M, Sakimura K, Isope P, Barbour B, Feltz A
J Physiol. 2016 Feb 15. 594(4):915-36.

Computer-aided Therapeutics in Treating Autoimmune Encephalitis—Reply.
Joubert B, Paoletti P, Honnorat J
JAMA Neurol. 2016 Jan. 73(1):128.

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages.
Lescot M, Hingamp P, Kojima KK, Villar E, Romac S, Veluchamy A, Boccara M, Jaillon O, Iudicone D, Bowler C, Wincker P, Claverie JM, Ogata H
ISME J. 2016 May. 10(5):1134-46.

Eco-evolutionary feedbacks between private and public goods : evidence from toxic algal blooms.
Driscoll WW, Hackett JD, Ferrière R
Ecol Lett. 2016 Jan. 19(1):81-97.

ChIPseq in Yeast Species : From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses.
Lelandais G, Blugeon C, Merhej J
Methods Mol Biol. 2016. 1361:185-202.

Siderophore production and the evolution of investment in a public good : An adaptive dynamics approach to kin selection.
Lee W, van Baalen M, Jansen VA
J Theor Biol. 2016 Jan 7. 388:61-71.

Nerves Control Redox Levels in Mature Tissues Through Schwann Cells and Hedgehog Signaling.
Meda F, Gauron C, Rampon C, Teillon J, Volovitch M, Vriz S
Antioxid Redox Signal. 2016 Feb 20. 24(6):299-311.

The Heterogeneity of Ly6C^hi Monocytes Controls Their Differentiation into iNOS⁺ Macrophages or Monocyte-Derived Dendritic Cells.
Menezes S, Melandri D, Anselmi G, Perchet T, Loschko J, Dubrot J, Patel R, Gautier EL, Hugues S, Longhi MP, Henry JY, Quezada SA, Lauvau G, Lennon‑Duménil AM, Gutiérrez‑Martínez E, Bessis A, Gomez‑Perdiguero E, Jacome‑Galarza CE, Garner H, Geissmann F, Golub R, Nussenzweig MC, Guermonprez P
Immunity. 2016 Dec 20. 45(6):1205-1218.

Phenotypic Evolution With and Beyond Genome Evolution.
Félix MA
Curr Top Dev Biol. 2016. 119:291-347.

Up and down the slope : replication timing and fork directionality gradients in eukaryotic genomes
Hyrien O
The Initiation of DNA Replication in Eukaryotes, (Ed. D. Kaplan), Springer. 2016.

2015

Laurent Jourdren — 2015-02-10T07:26:35Z

Methyl-CpG Binding Protein 2 (Mecp2) Regulates Sensory Function Through Sema5b and Robo2.
Leong WY, Lim ZH, Korzh V, Pietri T, Goh EL
Front Cell Neurosci. 2015. 9:481.

Bidirectional Control of Synaptic GABAAR Clustering by Glutamate and Calcium.
Bannai H, Niwa F, Sherwood MW, Shrivastava AN, Arizono M, Miyamoto A, Sugiura K, Lévi S, Triller A, Mikoshiba K
Cell Rep. 2015 Dec 29. 13(12):2768-80.

Quasi-planktonic behavior of foraging top marine predators.
Della Penna A, De Monte S, Kestenare E, Guinet C, d'Ovidio F
Sci Rep. 2015 Dec 15. 5:18063.

Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis.
Wassef M, Rodilla V, Teissandier A, Zeitouni B, Gruel N, Sadacca B, Irondelle M, Charruel M, Ducos B, Michaud A, Caron M, Marangoni E, Chavrier P, Le Tourneau C, Kamal M, Pasmant E, Vidaud M, Servant N, Reyal F, Meseure D, Vincent‑Salomon A, Fre S, Margueron R
Genes Dev. 2015 Dec 15. 29(24):2547-62.

The evolution of adhesiveness as a social adaptation.
Garcia T, Doulcier G, De Monte S
Elife. 2015 Nov 27. 4.

Presynaptic NMDA receptors : Roles and rules.
Bouvier G, Bidoret C, Casado M, Paoletti P
Neuroscience. 2015 Dec 17. 311:322-40.

Central role for ferritin in the day/night regulation of iron homeostasis in marine phytoplankton.
Botebol H, Lesuisse E, Šuták R, Six C, Lozano JC, Schatt P, Vergé V, Kirilovsky A, Morrissey J, Léger T, Camadro JM, Gueneugues A, Bowler C, Blain S, Bouget FY
Proc Natl Acad Sci U S A. 2015 Nov 24. 112(47):14652-7.

Predictive Spatiotemporal Manipulation of Signaling Perturbations Using Optogenetics.
Valon L, Etoc F, Remorino A, di Pietro F, Morin X, Dahan M, Coppey M
Biophys J. 2015 Nov 3. 109(9):1785-97.

Analysis and Interpretation of Superresolution Single-Particle Trajectories.
Holcman D, Hoze N, Schuss Z
Biophys J. 2015 Nov 3. 109(9):1761-71.

Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors.
Venturelli S, Belz RG, Kämper A, Berger A, von Horn K, Wegner A, Böcker A, Zabulon G, Langenecker T, Kohlbacher O, Barneche F, Weigel D, Lauer UM, Bitzer M, Becker C
Plant Cell. 2015 Nov. 27(11):3175-89.

Why so many sperm cells ?
Reynaud K, Schuss Z, Rouach N, Holcman D
Commun Integr Biol. 2015 May-Jun. 8(3):e1017156.

Self-assembly and plasticity of synaptic domains through a reaction-diffusion mechanism.
Haselwandter CA, Kardar M, Triller A, da Silveira RA
Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep. 92(3):032705.

The new nanophysiology : regulation of ionic flow in neuronal subcompartments.
Holcman D, Yuste R
Nat Rev Neurosci. 2015 Nov. 16(11):685-92.

Workshop report : Caenorhabditis nematodes as model organisms to study trait variation and its evolution.
Braendle C, Teotonio H
Worm. 2015 Apr-Jun. 4(2):e1021109.

FRET-Based Nanobiosensors for Imaging Intracellular Ca²⁺ and H⁺ Microdomains.
Zamaleeva AI, Despras G, Luccardini C, Collot M, de Waard M, Oheim M, Mallet JM, Feltz A
Sensors (Basel). 2015 Sep 23. 15(9):24662-80.

Ultrastructure and Membrane Traffic During Cell Division in the Marine Pennate Diatom Phaeodactylum tricornutum.
Tanaka A, De Martino A, Amato A, Montsant A, Mathieu B, Rostaing P, Tirichine L, Bowler C
Protist. 2015 Nov. 166(5):506-21.

How rods respond to single photons : Key adaptations of a G-protein cascade that enable vision at the physical limit of perception.
Reingruber J, Holcman D, Fain GL
Bioessays. 2015 Nov. 37(11):1243-52.

α-synuclein assemblies sequester neuronal α3-Na+/K+-ATPase and impair Na+ gradient.
Shrivastava AN, Redeker V, Fritz N, Pieri L, Almeida LG, Spolidoro M, Liebmann T, Bousset L, Renner M, Léna C, Aperia A, Melki R, Triller A
EMBO J. 2015 Oct 1. 34(19):2408-23.

Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions.
Amitai A, Toulouze M, Dubrana K, Holcman D
PLoS Comput Biol. 2015 Aug. 11(8):e1004433.

Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A
PLoS Comput Biol. 2015 Aug. 11(8):e1004426.

Synaptic dynamics and neuronal network connectivity are reflected in the distribution of times in Up states.
Dao Duc K, Parutto P, Chen X, Epsztein J, Konnerth A, Holcman D
Front Comput Neurosci. 2015. 9:96.

Syncytial apoptosis signaling network induced by the HIV-1 envelope glycoprotein complex : an overview.
Nardacci R, Perfettini JL, Grieco L, Thieffry D, Kroemer G, Piacentini M
Cell Death Dis. 2015 Aug 6. 6:e1846.

Are the SSB-Interacting Proteins RecO, RecG, PriA and the DnaB-Interacting Protein Rep Bound to Progressing Replication Forks in Escherichia coli ?
Bentchikou E, Chagneau C, Long E, Matelot M, Allemand JF, Michel B
PLoS One. 2015. 10(8):e0134892.

Neuronal and microglial regulators of cortical wiring : usual and novel guideposts.
Squarzoni P, Thion MS, Garel S
Front Neurosci. 2015. 9:248.

C/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and Myelopoiesis.
van Oevelen C, Collombet S, Vicent G, Hoogenkamp M, Lepoivre C, Badeaux A, Bussmann L, Sardina JL, Thieffry D, Beato M, Shi Y, Bonifer C, Graf T
Stem Cell Reports. 2015 Aug 11. 5(2):232-47.

Chimeric EWSR1-FLI1 regulates the Ewing sarcoma susceptibility gene EGR2 via a GGAA microsatellite.
Grünewald TG, Bernard V, Gilardi‑Hebenstreit P, Raynal V, Surdez D, Aynaud MM, Mirabeau O, Cidre‑Aranaz F, Tirode F, Zaidi S, Perot G, Jonker AH, Lucchesi C, Le Deley MC, Oberlin O, Marec‑Bérard P, Véron AS, Reynaud S, Lapouble E, Boeva V, Rio Frio T, Alonso J, Bhatia S, Pierron G, Cancel‑Tassin G, Cussenot O, Cox DG, Morton LM, Machiela MJ, Chanock SJ, Charnay P, Delattre O
Nat Genet. 2015 Sep. 47(9):1073-8.

Combined transcriptome studies identify AFF3 as a mediator of the oncogenic effects of β-catenin in adrenocortical carcinoma.
Lefèvre L, Omeiri H, Drougat L, Hantel C, Giraud M, Val P, Rodriguez S, Perlemoine K, Blugeon C, Beuschlein F, de Reyniès A, Rizk‑Rabin M, Bertherat J, Ragazzon B
Oncogenesis. 2015 Jul 27. 4:e161.

Boundary Caps Give Rise to Neurogenic Stem Cells and Terminal Glia in the Skin.
Gresset A, Coulpier F, Gerschenfeld G, Jourdon A, Matesic G, Richard L, Vallat JM, Charnay P, Topilko P
Stem Cell Reports. 2015 Aug 11. 5(2):278-90.

Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards.
Ten Hoopen P, Pesant S, Kottmann R, Kopf A, Bicak M, Claus S, Deneudt K, Borremans C, Thijsse P, Dekeyzer S, Schaap DM, Bowler C, Glöckner FO, Cochrane G
Stand Genomic Sci. 2015. 10:20.

Multilayer and interconnected post-transcriptional and co-transcriptional control of plant NLRs.
Halter T, Navarro L
Curr Opin Plant Biol. 2015 Aug. 26:127-34.

Robust network oscillations during mammalian respiratory rhythm generation driven by synaptic dynamics.
Guerrier C, Hayes JA, Fortin G, Holcman D
Proc Natl Acad Sci U S A. 2015 Aug 4. 112(31):9728-33.

A microfluidic device to study neuronal and motor responses to acute chemical stimuli in zebrafish.
Candelier R, Murmu MS, Romano SA, Jouary A, Debrégeas G, Sumbre G
Sci Rep. 2015 Jul 21. 5:12196.

Atlas of Cancer Signalling Network : a systems biology resource for integrative analysis of cancer data with Google Maps.
Kuperstein I, Bonnet E, Nguyen HA, Cohen D, Viara E, Grieco L, Fourquet S, Calzone L, Russo C, Kondratova M, Dutreix M, Barillot E, Zinovyev A
Oncogenesis. 2015 Jul 20. 4:e160.

Pervasive robustness in biological systems.
Félix MA, Barkoulas M
Nat Rev Genet. 2015 Aug. 16(8):483-96.

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda‑Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron‑Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A
Elife. 2015 Jul 15. 4:e06974.

Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms.
Bailleul B, Berne N, Murik O, Petroutsos D, Prihoda J, Tanaka A, Villanova V, Bligny R, Flori S, Falconet D, Krieger‑Liszkay A, Santabarbara S, Rappaport F, Joliot P, Tirichine L, Falkowski PG, Cardol P, Bowler C, Finazzi G
Nature. 2015 Aug 20. 524(7565):366-9.

Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher.
Normanno D, Boudarène L, Dugast‑Darzacq C, Chen J, Richter C, Proux F, Bénichou O, Voituriez R, Darzacq X, Dahan M
Nat Commun. 2015 Jul 7. 6:7357.

Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities.
Fiorini F, Bagchi D, Le Hir H, Croquette V
Nat Commun. 2015 Jul 3. 6:7581.

Route to genetically targeted optical electrophysiology : development and applications of voltage-sensitive fluorescent proteins.
Akemann W, Song C, Mutoh H, Knöpfel T
Neurophotonics. 2015 Apr-Jun. 2(2).

Open science resources for the discovery and analysis of Tara Oceans data.
Pesant S, Not F, Picheral M, Kandels‑Lewis S, Le Bescot N, Gorsky G, Iudicone D, Karsenti E, Speich S, Troublé R, Dimier C, Searson S
Sci Data. 2015. 2:150023.

Bursting reverberation as a multiscale neuronal network process driven by synaptic depression-facilitation.
Dao Duc K, Lee CY, Parutto P, Cohen D, Segal M, Rouach N, Holcman D
PLoS One. 2015. 10(5):e0124694.

Ocean plankton. Determinants of community structure in the global plankton interactome.
Lima‑Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio‑Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, Bontempi G, Cabello AM, Coppola L, Cornejo‑Castillo FM, d'Ovidio F, De Meester L, Ferrera I, Garet‑Delmas MJ, Guidi L, Lara E, Pesant S, Royo‑Llonch M, Salazar G, Sánchez P, Sebastian M, Souffreau C, Dimier C, Picheral M, Searson S, Kandels‑Lewis S, Gorsky G, Not F, Ogata H, Speich S, Stemmann L, Weissenbach J, Wincker P, Acinas SG, Sunagawa S, Bork P, Sullivan MB, Karsenti E, Bowler C, de Vargas C, Raes J
Science. 2015 May 22. 348(6237):1262073.

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.
de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Lima‑Mendez G, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels‑Lewis S, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E
Science. 2015 May 22. 348(6237):1261605.

Ocean plankton. Patterns and ecological drivers of ocean viral communities.
Brum JR, Ignacio‑Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels‑Lewis S, Picheral M, Searson S, Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB
Science. 2015 May 22. 348(6237):1261498.

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.
Villar E, Farrant GK, Follows M, Garczarek L, Speich S, Audic S, Bittner L, Blanke B, Brum JR, Brunet C, Casotti R, Chase A, Dolan JR, d'Ortenzio F, Gattuso JP, Grima N, Guidi L, Hill CN, Jahn O, Jamet JL, Le Goff H, Lepoivre C, Malviya S, Pelletier E, Romagnan JB, Roux S, Santini S, Scalco E, Schwenck SM, Tanaka A, Testor P, Vannier T, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels‑Lewis S, Acinas SG, Bork P, Boss E, de Vargas C, Gorsky G, Ogata H, Pesant S, Sullivan MB, Sunagawa S, Wincker P, Karsenti E, Bowler C, Not F, Hingamp P, Iudicone D
Science. 2015 May 22. 348(6237):1261447.

Ocean plankton. Structure and function of the global ocean microbiome.
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo‑Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima‑Mendez G, Poulain J, Poulos BT, Royo‑Llonch M, Sarmento H, Vieira‑Silva S, Dimier C, Picheral M, Searson S, Kandels‑Lewis S, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P
Science. 2015 May 22. 348(6237):1261359.

Tara Oceans. Tara Oceans studies plankton at planetary scale. Introduction.
Bork P, Bowler C, de Vargas C, Gorsky G, Karsenti E, Wincker P
Science. 2015 May 22. 348(6237):873.

Computational eco-systems biology in Tara Oceans : translating data into knowledge.
Sunagawa S, Karsenti E, Bowler C, Bork P
Mol Syst Biol. 2015 May 21. 11(5):809.

A new approach to the generation time in matrix population models.
Bienvenu F, Legendre S
Am Nat. 2015 Jun. 185(6):834-43.

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.
Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L
Genome Biol. 2015 May 20. 16:102.

Partner choice creates fairness in humans.
Debove S, André JB, Baumard N
Proc Biol Sci. 2015 Jun 7. 282(1808):20150392.

A novel inhibitory nucleo-cortical circuit controls cerebellar Golgi cell activity.
Ankri L, Husson Z, Pietrajtis K, Proville R, Léna C, Yarom Y, Dieudonné S, Uusisaari MY
Elife. 2015 May 12. 4.

Light signaling controls nuclear architecture reorganization during seedling establishment.
Bourbousse C, Mestiri I, Zabulon G, Bourge M, Formiggini F, Koini MA, Brown SC, Fransz P, Bowler C, Barneche F
Proc Natl Acad Sci U S A. 2015 May 26. 112(21):E2836-44.

Potentiel thérapeutique de la neuromodulation optogénétique.
Vandecasteele M, Senova YS, Palfi S, Dugué GP
Med Sci (Paris). 2015 Apr. 31(4):404-16.

Les approches écologiques et évolutives incontournables pour mieux comprendre les épidémies de grippe aviaire.
Cazelles B, Tian H, Roche B
Med Sci (Paris). 2015 Apr. 31(4):372-3.

Neuronal morphology generates high-frequency firing resonance.
Ostojic S, Szapiro G, Schwartz E, Barbour B, Brunel N, Hakim V
J Neurosci. 2015 May 6. 35(18):7056-68.

Zeb family members and boundary cap cells underlie developmental plasticity of sensory nociceptive neurons.
Ohayon D, Ventéo S, Sonrier C, Lafon PA, Garcès A, Valmier J, Rivat C, Topilko P, Carroll P, Pattyn A
Dev Cell. 2015 May 4. 33(3):343-50.

Control of brain patterning by Engrailed paracrine transfer : a new function of the Pbx interaction domain.
Rampon C, Gauron C, Lin T, Meda F, Dupont E, Cosson A, Ipendey E, Frerot A, Aujard I, Le Saux T, Bensimon D, Jullien L, Volovitch M, Vriz S, Joliot A
Development. 2015 May 15. 142(10):1840-9.

Out-of-focus background subtraction for fast structured illumination super-resolution microscopy of optically thick samples.
Vermeulen P, Zhan H, Orieux F, Olivo‑Marin JC, Lenkei Z, Loriette V, Fragola A
J Microsc. 2015 Sep. 259(3):257-68.

Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome.
Naville M, Ishibashi M, Ferg M, Bengani H, Rinkwitz S, Krecsmarik M, Hawkins TA, Wilson SW, Manning E, Chilamakuri CS, Wilson DI, Louis A, Lucy Raymond F, Rastegar S, Strähle U, Lenhard B, Bally‑Cuif L, van Heyningen V, FitzPatrick DR, Becker TS, Roest Crollius H
Nat Commun. 2015 Apr 24. 6:6904.

RSAT 2015 : Regulatory Sequence Analysis Tools.
Medina‑Rivera A, Defrance M, Sand O, Herrmann C, Castro‑Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras‑Moreira B, Artufel M, Charbonnier‑Khamvongsa L, Hernandez C, Thieffry D, Thomas‑Chollier M, van Helden J
Nucleic Acids Res. 2015 Jul 1. 43(W1):W50-6.

Inferring epigenetic dynamics from kin correlations.
Hormoz S, Desprat N, Shraiman BI
Proc Natl Acad Sci U S A. 2015 May 5. 112(18):E2281-9.

Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis.
Ito T, Tarutani Y, To TK, Kassam M, Duvernois‑Berthet E, Cortijo S, Takashima K, Saze H, Toyoda A, Fujiyama A, Colot V, Kakutani T
PLoS Genet. 2015 Apr. 11(4):e1005154.

Radixin regulates synaptic GABAA receptor density and is essential for reversal learning and short-term memory.
Hausrat TJ, Muhia M, Gerrow K, Thomas P, Hirdes W, Tsukita S, Heisler FF, Herich L, Dubroqua S, Breiden P, Feldon J, Schwarz JR, Yee BK, Smart TG, Triller A, Kneussel M
Nat Commun. 2015 Apr 20. 6:6872.

Subrepellent doses of Slit1 promote Netrin-1 chemotactic responses in subsets of axons.
Dupin I, Lokmane L, Dahan M, Garel S, Studer V
Neural Dev. 2015 Mar 20. 10:5.

Functional characterization of the diatom cyclin-dependent kinase A2 as a mitotic regulator reveals plant-like properties in a non-green lineage.
Huysman MJ, Tanaka A, Bowler C, Vyverman W, De Veylder L
BMC Plant Biol. 2015 Mar 14. 15:86.

Origin and diversification of living cycads : a cautionary tale on the impact of the branching process prior in Bayesian molecular dating.
Condamine FL, Nagalingum NS, Marshall CR, Morlon H
BMC Evol Biol. 2015 Apr 17. 15:65.

Trophic groups and modules : two levels of group detection in food webs.
Gauzens B, Thébault E, Lacroix G, Legendre S
J R Soc Interface. 2015 May 6. 12(106).

The retrotrapezoid nucleus neurons expressing Atoh1 and Phox2b are essential for the respiratory response to CO₂.
Ruffault PL, D'Autréaux F, Hayes JA, Nomaksteinsky M, Autran S, Fujiyama T, Hoshino M, Hägglund M, Kiehn O, Brunet JF, Fortin G, Goridis C
Elife. 2015 Apr 13. 4.

Intermolecular recognition of the non-coding RNA 7SK and HEXIM protein in perspective.
Martinez‑Zapien D, Saliou JM, Han X, Atmanene C, Proux F, Cianférani S, Dock‑Bregeon AC
Biochimie. 2015 Oct. 117:63-71.

Principes et applications de l'optogénétique en neuroscience.
Dugué GP, Tricoire L
Med Sci (Paris). 2015 Mar. 31(3):291-303.

Amplification des centrioles - Quand le centriole fils du centrosome prend le contrôle.
Al Jord A, Spassky N, Meunier A
Med Sci (Paris). 2015 Mar. 31(3):250-3.

When everything is not everywhere but species evolve : an alternative method to model adaptive properties of marine ecosystems.
Sauterey B, Ward BA, Follows MJ, Bowler C, Claessen D
J Plankton Res. 2015 Jan. 37(1):28-47.

Ependymal cell differentiation, from monociliated to multiciliated cells.
Delgehyr N, Meunier A, Faucourt M, Bosch Grau M, Strehl L, Janke C, Spassky N
Methods Cell Biol. 2015. 127:19-35.

The neuroglial potassium cycle during neurotransmission : role of Kir4.1 channels.
Sibille J, Dao Duc K, Holcman D, Rouach N
PLoS Comput Biol. 2015 Mar. 11(3):e1004137.

CaRuby-Nano : a novel high affinity calcium probe for dual color imaging.
Collot M, Wilms CD, Bentkhayet A, Marcaggi P, Couchman K, Charpak S, Dieudonné S, Häusser M, Feltz A, Mallet JM
Elife. 2015 Mar 31. 4.

Changes in rodent abundance and weather conditions potentially drive hemorrhagic fever with renal syndrome outbreaks in Xi'an, China, 2005-2012.
Tian HY, Yu PB, Luis AD, Bi P, Cazelles B, Laine M, Huang SQ, Ma CF, Zhou S, Wei J, Li S, Lu XL, Qu JH, Dong JH, Tong SL, Wang JJ, Grenfell B, Xu B
PLoS Negl Trop Dis. 2015 Mar. 9(3):e0003530.

CLIP-seq to discover transcriptome-wide imprinting of RNA binding proteins in living cells.
Saulière J, Le Hir H
Methods Mol Biol. 2015. 1296:151-60.

Effect of dopaminergic D1 receptors on plasticity is dependent of serotoninergic 5-HT1A receptors in L5-pyramidal neurons of the prefrontal cortex.
Meunier CN, Callebert J, Cancela JM, Fossier P
PLoS One. 2015. 10(3):e0120286.

How Ecology and Landscape Dynamics Shape Phylogenetic Trees.
Gascuel F, Ferrière R, Aguilée R, Lambert A
Syst Biol. 2015 Jul. 64(4):590-607.

How environmental conditions impact mosquito ecology and Japanese encephalitis : an eco-epidemiological approach.
Tian HY, Bi P, Cazelles B, Zhou S, Huang SQ, Yang J, Pei Y, Wu XX, Fu SH, Tong SL, Wang HY, Xu B
Environ Int. 2015 Jun. 79:17-24.

Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens.
Gallie J, Libby E, Bertels F, Remigi P, Jendresen CB, Ferguson GC, Desprat N, Buffing MF, Sauer U, Beaumont HJ, Martinussen J, Kilstrup M, Rainey PB
PLoS Biol. 2015 Mar. 13(3):e1002109.

Immune quiescence of the brain is set by astroglial connexin 43.
Boulay AC, Mazeraud A, Cisternino S, Saubaméa B, Mailly P, Jourdren L, Blugeon C, Mignon V, Smirnova M, Cavallo A, Ezan P, Avé P, Dingli F, Loew D, Vieira P, Chrétien F, Cohen‑Salmon M
J Neurosci. 2015 Mar 11. 35(10):4427-39.

Structural insight into the mechanism of stabilization of the 7SK small nuclear RNA by LARP7.
Uchikawa E, Natchiar KS, Han X, Proux F, Roblin P, Zhang E, Durand A, Klaholz BP, Dock‑Bregeon AC
Nucleic Acids Res. 2015 Mar 31. 43(6):3373-88.

Properties and molecular identity of NMDA receptors at synaptic and non-synaptic inputs in cerebellar molecular layer interneurons.
Bidoret C, Bouvier G, Ayon A, Szapiro G, Casado M
Front Synaptic Neurosci. 2015. 7:1.

Control of Plasma Membrane Permeability by ABC Transporters.
Khakhina S, Johnson SS, Manoharlal R, Russo SB, Blugeon C, Lemoine S, Sunshine AB, Dunham MJ, Cowart LA, Devaux F, Moye‑Rowley WS
Eukaryot Cell. 2015 May. 14(5):442-53.

The Susd2 protein regulates neurite growth and excitatory synaptic density in hippocampal cultures.
Nadjar Y, Triller A, Bessereau JL, Dumoulin A
Mol Cell Neurosci. 2015 Mar. 65:82-91.

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors.
Starick SR, Ibn‑Salem J, Jurk M, Hernandez C, Love MI, Chung HR, Vingron M, Thomas‑Chollier M, Meijsing SH
Genome Res. 2015 Jun. 25(6):825-35.

Phylogenies support out-of-equilibrium models of biodiversity.
Manceau M, Lambert A, Morlon H
Ecol Lett. 2015 Apr. 18(4):347-56.

The TORC2 component, Sin1, controls migration of anterior mesendoderm during zebrafish gastrulation.
Dumortier JG, David NB
PLoS One. 2015. 10(2):e0118474.

A subcortical inhibitory signal for behavioral arrest in the thalamus.
Giber K, Diana MA, Plattner V, Dugué GP, Bokor H, Rousseau CV, Maglóczky Z, Havas L, Hangya B, Wildner H, Zeilhofer HU, Dieudonné S, Acsády L
Nat Neurosci. 2015 Apr. 18(4):562-568.

Spontaneous neuronal network dynamics reveal circuit's functional adaptations for behavior.
Romano SA, Pietri T, Pérez‑Schuster V, Jouary A, Haudrechy M, Sumbre G
Neuron. 2015 Mar 4. 85(5):1070-85.

The Sarcoglycan complex is expressed in the cerebrovascular system and is specifically regulated by astroglial Cx30 channels.
Boulay AC, Saubaméa B, Cisternino S, Mignon V, Mazeraud A, Jourdren L, Blugeon C, Cohen‑Salmon M
Front Cell Neurosci. 2015. 9:9.

The shortest path is not the one you know : application of biological network resources in precision oncology research.
Kuperstein I, Grieco L, Cohen DP, Thieffry D, Zinovyev A, Barillot E
Mutagenesis. 2015 Mar. 30(2):191-204.

Contingency in the evolutionary emergence of reciprocal cooperation.
André JB
Am Nat. 2015 Mar. 185(3):303-16.

Epigenetic basis of morphological variation and phenotypic plasticity in Arabidopsis thaliana.
Kooke R, Johannes F, Wardenaar R, Becker F, Etcheverry M, Colot V, Vreugdenhil D, Keurentjes JJ
Plant Cell. 2015 Feb. 27(2):337-48.

Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed by the genome and transcriptome.
Tanaka T, Maeda Y, Veluchamy A, Tanaka M, Abida H, Maréchal E, Bowler C, Muto M, Sunaga Y, Tanaka M, Yoshino T, Taniguchi T, Fukuda Y, Nemoto M, Matsumoto M, Wong PS, Aburatani S, Fujibuchi W
Plant Cell. 2015 Jan. 27(1):162-76.

Cooperative development of logical modelling standards and tools with CoLoMoTo.
Naldi A, Monteiro PT, Müssel C, Kestler HA, Thieffry D, Xenarios I, Saez‑Rodriguez J, Helikar T, Chaouiya C
Bioinformatics. 2015 Apr 1. 31(7):1154-9.

Editorial overview : neurosciences : targeting glutamatergic signaling in CNS diseases : new hopes ?
Paoletti P, Pin JP
Curr Opin Pharmacol. 2015 Feb. 20:iv-vi.

Peaks cloaked in the mist : the landscape of mammalian replication origins.
Hyrien O
J Cell Biol. 2015 Jan 19. 208(2):147-60.

Primary and secondary siRNA synthesis triggered by RNAs from food bacteria in the ciliate Paramecium tetraurelia.
Carradec Q, Götz U, Arnaiz O, Pouch J, Simon M, Meyer E, Marker S
Nucleic Acids Res. 2015 Feb 18. 43(3):1818-33.

A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake.
Morrissey J, Sutak R, Paz‑Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C
Curr Biol. 2015 Feb 2. 25(3):364-71.

A genomic region encompassing a newly identified exon provides enhancing activity sufficient for normal myo7aa expression in zebrafish sensory hair cells.
Ernest S, Rosa FM
Dev Neurobiol. 2015 Sep. 75(9):961-83.

PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
Ikeuchi M, Iwase A, Rymen B, Harashima H, Shibata M, Ohnuma M, Breuer C, Morao AK, de Lucas M, De Veylder L, Goodrich J, Brady SM, Roudier F, Sugimoto K
Nat Plants. 2015 Jun 29. 1:15089.

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.
Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero‑Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen‑Min‑Tao R, Iglesias‑Fernández R, Schuster SC, Alonso‑Blanco C, Roudier F, Carbonero P, Paz‑Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K
Nat Plants. 2015 Feb 2. 1:14023.

Stochastic dynamics of adaptive trait and neutral marker driven by eco-evolutionary feedbacks.
Billiard S, Ferrière R, Méléard S, Tran VC
J Math Biol. 2015 Nov. 71(5):1211-42.

Presence in Mediterranean hotspots and floral symmetry affect speciation and extinction rates in Proteaceae.
Reyes E, Morlon H, Sauquet H
New Phytol. 2015 Jul. 207(2):401-10.

Evolution of equal division among unequal partners.
Debove S, Baumard N, André JB
Evolution. 2015 Feb. 69(2):561-9.

Molecular dissection of segment formation in the developing hindbrain.
Labalette C, Wassef MA, Desmarquet‑Trin Dinh C, Bouchoucha YX, Le Men J, Charnay P, Gilardi‑Hebenstreit P
Development. 2015 Jan 1. 142(1):185-95.

Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in Phaeodactylum tricornutum.
Abida H, Dolch LJ, Meï C, Villanova V, Conte M, Block MA, Finazzi G, Bastien O, Tirichine L, Bowler C, Rébeillé F, Petroutsos D, Jouhet J, Maréchal E
Plant Physiol. 2015 Jan. 167(1):118-36.

Allosteric modulators of NMDA receptors : multiple sites and mechanisms.
Zhu S, Paoletti P
Curr Opin Pharmacol. 2015 Feb. 20:14-23.

GenomicusPlants : a web resource to study genome evolution in flowering plants.
Louis A, Murat F, Salse J, Crollius HR
Plant Cell Physiol. 2015 Jan. 56(1):e4.

Genomicus update 2015 : KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics.
Louis A, Nguyen NT, Muffato M, Roest Crollius H
Nucleic Acids Res. 2015 Jan. 43(Database issue):D682-9.

Synaptic receptor dynamics : from theoretical concepts to deep quantification and chemistry in cellulo.
Salvatico C, Specht CG, Triller A
Neuropharmacology. 2015 Jan. 88:2-9.

Kinetics of aggregation with a finite number of particles and application to viral capsid assembly.
Hoze N, Holcman D
J Math Biol. 2015 Jun. 70(7):1685-705.

Post-transcriptional regulation in the nucleus and cytoplasm : study of mean time to threshold (MTT) and narrow escape problem.
Holcman D, Dao Duc K, Jones A, Byrne H, Burrage K
J Math Biol. 2015 Mar. 70(4):805-28.

The 3D organization of chromatin explains evolutionary fragile genomic regions.
Berthelot C, Muffato M, Abecassis J, Roest Crollius H
Cell Rep. 2015 Mar 24. 10(11):1913-24.

Anhydrobiosis and freezing-tolerance : adaptations that facilitate the establishment of Panagrolaimus nematodes in polar habitats.
McGill LM, Shannon AJ, Pisani D, Félix MA, Ramløv H, Dix I, Wharton DA, Burnell AM
PLoS One. 2015. 10(3):e0116084.

C. elegans outside the Petri dish.
Frézal L, Félix MA
Elife. 2015 Mar 30. 4.

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei.
Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, Herold S, Seidl‑Seiboth V, Seiboth B, Espeso EA, Margeot A, Kubicek CP
Mol Microbiol. 2015 Apr. 96(2):405-18.

Fast spatial beam shaping by acousto-optic diffraction for 3D non-linear microscopy.
Akemann W, Léger JF, Ventalon C, Mathieu B, Dieudonné S, Bourdieu L
Opt Express. 2015 Nov 2. 23(22):28191-205.

Characterization of the angular memory effect of scattered light in biological tissues.
Schott S, Bertolotti J, Léger JF, Bourdieu L, Gigan S
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2011

Laurent Jourdren — 2014-12-01T14:48:33Z

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.
Guilbaud G, Rappailles A, Baker A, Chen CL, Arneodo A, Goldar A, d'Aubenton‑Carafa Y, Thermes C, Audit B, Hyrien O
PLoS Comput Biol. 2011 Dec. 7(12):e1002322.

Syntaxin1A lateral diffusion reveals transient and local SNARE interactions.
Ribrault C, Reingruber J, Petković M, Galli T, Ziv NE, Holcman D, Triller A
J Neurosci. 2011 Nov 30. 31(48):17590-602.

Homeoprotein Phox2b commands a somatic-to-visceral switch in cranial sensory pathways.
D'Autréaux F, Coppola E, Hirsch MR, Birchmeier C, Brunet JF
Proc Natl Acad Sci U S A. 2011 Dec 13. 108(50):20018-23.

C. elegans : la puissance de la simplicité.
Bessereau JL
Ann Pathol. 2011 Nov. 31(5 Suppl):S60-2.

Genome engineering by transgene-instructed gene conversion in C. elegans.
Robert VJ, Bessereau JL
Methods Cell Biol. 2011. 106:65-88.

Single myelin fiber imaging in living rodents without labeling by deep optical coherence microscopy.
Ben Arous J, Binding J, Léger JF, Casado M, Topilko P, Gigan S, Boccara AC, Bourdieu L
J Biomed Opt. 2011 Nov. 16(11):116012.

The residence time of GABA(A)Rs at inhibitory synapses is determined by direct binding of the receptor α1 subunit to gephyrin.
Mukherjee J, Kretschmannova K, Gouzer G, Maric HM, Ramsden S, Tretter V, Harvey K, Davies PA, Triller A, Schindelin H, Moss SJ
J Neurosci. 2011 Oct 12. 31(41):14677-87.

Lateral diffusion on tubular membranes : quantification of measurements bias.
Renner M, Domanov Y, Sandrin F, Izeddin I, Bassereau P, Triller A
PLoS One. 2011. 6(9):e25731.

Physiological roles of microglia during development.
Pont‑Lezica L, Béchade C, Belarif‑Cantaut Y, Pascual O, Bessis A
J Neurochem. 2011 Dec. 119(5):901-8.

Transcription factor search for a DNA promoter in a three-state model.
Reingruber J, Holcman D
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug. 84(2 Pt 1):020901.

Inhibiting eukaryotic transcription : Which compound to choose ? How to evaluate its activity ?
Bensaude O
Transcription. 2011 May. 2(3):103-108.

Identification of the sites of action of SrmB, a DEAD-box RNA helicase involved in Escherichia coli ribosome assembly.
Proux F, Dreyfus M, Iost I
Mol Microbiol. 2011 Oct. 82(2):300-11.

Regulation of glycine receptor diffusion properties and gephyrin interactions by protein kinase C.
Specht CG, Grünewald N, Pascual O, Rostgaard N, Schwarz G, Triller A
EMBO J. 2011 Aug 9. 30(18):3842-53.

Late emergence of the vibrissa direction selectivity map in the rat barrel cortex.
Kremer Y, Léger JF, Goodman D, Brette R, Bourdieu L
J Neurosci. 2011 Jul 20. 31(29):10689-700.

Mitotic spindle orientation in asymmetric and symmetric cell divisions during animal development.
Morin X, Bellaïche Y
Dev Cell. 2011 Jul 19. 21(1):102-19.

Molecular basis of positive allosteric modulation of GluN2B NMDA receptors by polyamines.
Mony L, Zhu S, Carvalho S, Paoletti P
EMBO J. 2011 Jun 17. 30(15):3134-46.

Microscopies cellulaires à l'échelle de la molécule individuelle.
Izeddin I, Darzacq X, Dahan M
Med Sci (Paris). 2011 May. 27(5):547-52.

Physiological and molecular evidence that environmental changes elicit morphological interconversion in the model diatom Phaeodactylum tricornutum.
De Martino A, Bartual A, Willis A, Meichenin A, Villazán B, Maheswari U, Bowler C
Protist. 2011 Jul. 162(3):462-81.

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis.
Ahmed I, Sarazin A, Bowler C, Colot V, Quesneville H
Nucleic Acids Res. 2011 Sep 1. 39(16):6919-31.

Replication-fork stalling and processing at a single psoralen interstrand crosslink in Xenopus egg extracts.
Le Breton C, Hennion M, Arimondo PB, Hyrien O
PLoS One. 2011 Apr 15. 6(4):e18554.

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.
Roudier F, Ahmed I, Bérard C, Sarazin A, Mary‑Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois‑Berthet E, Al‑Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin‑Magniette ML, Robin S, Caboche M, Colot V
EMBO J. 2011 May 18. 30(10):1928-38.

Functional reconstitution of Haemonchus contortus acetylcholine receptors in Xenopus oocytes provides mechanistic insights into levamisole resistance.
Boulin T, Fauvin A, Charvet CL, Cortet J, Cabaret J, Bessereau JL, Neveu C
Br J Pharmacol. 2011 Nov. 164(5):1421-32.

Brain refractive index measured in vivo with high-NA defocus-corrected full-field OCT and consequences for two-photon microscopy.
Binding J, Ben Arous J, Léger JF, Gigan S, Boccara C, Bourdieu L
Opt Express. 2011 Mar 14. 19(6):4833-47.

Decoding algal genomes : tracing back the history of photosynthetic life on Earth.
Tirichine L, Bowler C
Plant J. 2011 Apr. 66(1):45-57.

The presynaptic dense projection of the Caenorhabditis elegans cholinergic neuromuscular junction localizes synaptic vesicles at the active zone through SYD-2/liprin and UNC-10/RIM-dependent interactions.
Stigloher C, Zhan H, Zhen M, Richmond J, Bessereau JL
J Neurosci. 2011 Mar 23. 31(12):4388-96.

Molecular basis of NMDA receptor functional diversity.
Paoletti P
Eur J Neurosci. 2011 Apr. 33(8):1351-65.

Nitric oxide regulates astrocyte maturation in the hippocampus : involvement of NOS2.
Béchade C, Pascual O, Triller A, Bessis A
Mol Cell Neurosci. 2011 Apr. 46(4):762-9.

The conserved factor DE-ETIOLATED 1 cooperates with CUL4-DDB1DDB2 to maintain genome integrity upon UV stress.
Castells E, Molinier J, Benvenuto G, Bourbousse C, Zabulon G, Zalc A, Cazzaniga S, Genschik P, Barneche F, Bowler C
EMBO J. 2011 Mar 16. 30(6):1162-72.

Dok4 is involved in Schwann cell myelination and axonal interaction in vitro.
Blugeon C, Le Crom S, Richard L, Vallat JM, Charnay P, Decker L
Glia. 2011 Mar. 59(3):351-62.

Barhl2 limits growth of the diencephalic primordium through Caspase3 inhibition of beta-catenin activation.
Juraver‑Geslin HA, Ausseil JJ, Wassef M, Durand BC
Proc Natl Acad Sci U S A. 2011 Feb 8. 108(6):2288-93.

A single immunoglobulin-domain protein required for clustering acetylcholine receptors in C. elegans.
Rapti G, Richmond J, Bessereau JL
EMBO J. 2011 Feb 16. 30(4):706-18.

Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling.
Bouhouche K, Gout JF, Kapusta A, Bétermier M, Meyer E
Nucleic Acids Res. 2011 May. 39(10):4249-64.

Screening for genes that wire the cerebral cortex.
Lokmane L, Garel S
BMC Biol. 2011 Jan 7. 9:1.

Heat shock cognate protein 70 regulates gephyrin clustering.
Machado P, Rostaing P, Guigonis JM, Renner M, Dumoulin A, Samson M, Vannier C, Triller A
J Neurosci. 2011 Jan 5. 31(1):3-14.

Krox20 inactivation in the PNS leads to CNS/PNS boundary transgression by central glia.
Coulpier F, Decker L, Funalot B, Vallat JM, Garcia‑Bragado F, Charnay P, Topilko P
Rev Neurol (Paris). 2011 Jan. 167(1):51-6.

Diffusion laws in dendritic spines.
Holcman D, Schuss Z
J Math Neurosci. 2011 Oct 27. 1(1):10.

Hindbrain patterning requires fine-tuning of early krox20 transcription by Sprouty 4.
Labalette C, Bouchoucha YX, Wassef MA, Gongal PA, Le Men J, Becker T, Gilardi‑Hebenstreit P, Charnay P
Development. 2011 Jan. 138(2):317-26.

Stochastic modeling of gene activation and applications to cell regulation.
Malherbe G, Holcman D
J Theor Biol. 2011 Feb 21. 271(1):51-63.

Functional evidence for a twisted conformation of the NMDA receptor GluN2A subunit N-terminal domain.
Stroebel D, Carvalho S, Paoletti P
Neuropharmacology. 2011 Jan. 60(1):151-8.

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms.
Allen AE, Dupont CL, Oborník M, Horák A, Nunes‑Nesi A, McCrow JP, Zheng H, Johnson DA, Hu H, Fernie AR, Bowler C
Nature. 2011 May 12. 473(7346):203-7.

Mobility in geometrically confined membranes.
Domanov YA, Aimon S, Toombes GE, Renner M, Quemeneur F, Triller A, Turner MS, Bassereau P
Proc Natl Acad Sci U S A. 2011 Aug 2. 108(31):12605-10.

Formation and stability of synaptic receptor domains.
Haselwandter CA, Calamai M, Kardar M, Triller A, da Silveira RA
Phys Rev Lett. 2011 Jun 10. 106(23):238104.

Super-resolution dynamic imaging of dendritic spines using a low-affinity photoconvertible actin probe.
Izeddin I, Specht CG, Lelek M, Darzacq X, Triller A, Zimmer C, Dahan M
PLoS One. 2011 Jan 17. 6(1):e15611.

Fgf signaling controls pharyngeal taste bud formation through miR-200 and Delta-Notch activity.
Kapsimali M, Kaushik AL, Gibon G, Dirian L, Ernest S, Rosa FM
Development. 2011 Aug. 138(16):3473-84.

A holistic approach to marine eco-systems biology.
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels‑Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P
PLoS Biol. 2011 Oct. 9(10):e1001177.

Labeling neuronal membrane receptors with quantum dots.
Lévi S, Dahan M, Triller A
Cold Spring Harb Protoc. 2011 Mar 1. 2011(3):prot5580.

Stemming epigenetics in marine stramenopiles.
Maumus F, Rabinowicz P, Bowler C, Rivarola M
Curr Genomics. 2011 Aug. 12(5):357-70.

Stage-specific biomass overcompensation by juveniles in response to increased adult mortality in a wild fish population.
Ohlberger J, Langangen Ø, Edeline E, Claessen D, Winfield IJ, Stenseth NC, Vøllestad LA
Ecology. 2011 Dec. 92(12):2175-82.

From the stochasticity of molecular processes to the variability of synaptic transmission.
Ribrault C, Sekimoto K, Triller A
Nat Rev Neurosci. 2011 Jun 20. 12(7):375-87.

GABA(A) Receptors : Post-Synaptic Co-Localization and Cross-Talk with Other Receptors.
Shrivastava AN, Triller A, Sieghart W
Front Cell Neurosci. 2011. 5:7.

Regulation of GABA(A) receptor dynamics by interaction with purinergic P2X(2) receptors.
Shrivastava AN, Triller A, Sieghart W, Sarto‑Jackson I
J Biol Chem. 2011 Apr 22. 286(16):14455-68.

Ultrastructural organization of presynaptic terminals.
Siksou L, Triller A, Marty S
Curr Opin Neurobiol. 2011 Apr. 21(2):261-8.

Assessing the localization of centrosomal proteins by PALM/STORM nanoscopy.
Sillibourne JE, Specht CG, Izeddin I, Hurbain I, Tran P, Triller A, Darzacq X, Dahan M, Bornens M
Cytoskeleton (Hoboken). 2011 Nov. 68(11):619-27.

A lateral belt of cortical LGN and NuMA guides mitotic spindle movements and planar division in neuroepithelial cells.
Peyre E, Jaouen F, Saadaoui M, Haren L, Merdes A, Durbec P, Morin X
J Cell Biol. 2011 Apr 4. 193(1):141-54.

Specific and integrated roles of Lmx1a, Lmx1b and Phox2a in ventral midbrain development.
Deng Q, Andersson E, Hedlund E, Alekseenko Z, Coppola E, Panman L, Millonig JH, Brunet JF, Ericson J, Perlmann T
Development. 2011 Aug. 138(16):3399-408.

Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.
Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, Domcke S, Le Hir H, Conti E
Mol Cell. 2011 Mar 18. 41(6):693-703.

Replication-associated mutational asymmetry in the human genome.
Chen CL, Duquenne L, Audit B, Guilbaud G, Rappailles A, Baker A, Huvet M, d'Aubenton‑Carafa Y, Hyrien O, Arneodo A, Thermes C
Mol Biol Evol. 2011 Aug. 28(8):2327-37.

Physiological and toxic effects of purine intermediate 5-amino-4-imidazolecarboxamide ribonucleotide (AICAR) in yeast.
Hürlimann HC, Laloo B, Simon‑Kayser B, Saint‑Marc C, Coulpier F, Lemoine S, Daignan‑Fornier B, Pinson B
J Biol Chem. 2011 Sep 2. 286(35):30994-1002.

Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae.
Jung PP, Fritsch ES, Blugeon C, Souciet JL, Potier S, Lemoine S, Schacherer J, de Montigny J
BMC Genomics. 2011 Jun 28. 12:331.

Boundary cap cells are peripheral nervous system stem cells that can be redirected into central nervous system lineages.
Zujovic V, Thibaud J, Bachelin C, Vidal M, Deboux C, Coulpier F, Stadler N, Charnay P, Topilko P, Baron‑Van Evercooren A
Proc Natl Acad Sci U S A. 2011 Jun 28. 108(26):10714-9.

The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei : a master regulator of carbon assimilation.
Portnoy T, Margeot A, Linke R, Atanasova L, Fekete E, Sándor E, Hartl L, Karaffa L, Druzhinina IS, Seiboth B, Le Crom S, Kubicek CP
BMC Genomics. 2011 May 27. 12:269.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Kubicek CP, Herrera‑Estrella A, Seidl‑Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas‑Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes‑Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel‑Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez‑Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández‑Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti‑Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo‑Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV
Genome Biol. 2011. 12(4):R40.

Secreted amyloid precursor protein β and secreted amyloid precursor protein α induce axon outgrowth in vitro through Egr1 signaling pathway.
Chasseigneaux S, Dinc L, Rose C, Chabret C, Coulpier F, Topilko P, Mauger G, Allinquant B
PLoS One. 2011 Jan 27. 6(1):e16301.

Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase.
Portnoy T, Margeot A, Seidl‑Seiboth V, Le Crom S, Ben Chaabane F, Linke R, Seiboth B, Kubicek CP
Eukaryot Cell. 2011 Feb. 10(2):262-71.