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Publications

2024

The TELOMERE REPEAT BINDING proteins TRB4 and TRB5 function as transcriptional activators of PRC2-controlled genes to regulate plant development.
Amiard S, Feit L, Vanrobays E, Simon L, Le Goff S, Loizeau L, Wolff L, Butter F, Bourbousse C, Barneche F, Tatout C, Probst AV
Plant Commun. 2024 Apr 1:100890.

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities.
Giordano N, Gaudin M, Trottier C, Delage E, Nef C, Bowler C, Chaffron S
Nat Commun. 2024 Mar 28. 15(1):2721.

Overlapping action of T(3) and T(4) during Xenopus laevis development.
Tribondeau A, Du Pasquier D, Benchouaia M, Blugeon C, Buisine N, Sachs LM
Front Endocrinol (Lausanne). 2024. 15:1360188.

Observing G4 formation and its resolution by Pif1 in real time by manipulation under magnetic tweezers.
Valle‑Orero J, Rieu M, Allemand JF, Bujaa D, Joubert A, Tran PLT, Croquette V, Boulé JB
Methods Enzymol. 2024. 695:119-158.

Translational modulator ISRIB alleviates synaptic and behavioral phenotypes in Fragile X syndrome.
Coulson RL, Frattini V, Moyer CE, Hodges J, Walter P, Mourrain P, Zuo Y, Wang GX
iScience. 2024 Apr 19. 27(4):109259.

New plastids, old proteins : repeated endosymbiotic acquisitions in kareniacean dinoflagellates.
Novák Vanclová AM, Nef C, Füssy Z, Vancl A, Liu F, Bowler C, Dorrell RG
EMBO Rep. 2024 Mar 18.

Neutral diversity in experimental metapopulations.
Doulcier G, Lambert A
Theor Popul Biol. 2024 Mar 15.

Use of DNA forceps to measure receptor-ligand dissociation equilibrium constants in a single-molecule competition assay.
Stransky F, Kostrz D, Follenfant M, Pomplun S, Meyners C, Strick T, Hausch F, Gosse C
Methods Enzymol. 2024. 694:51-82.

The pelvic organs receive no parasympathetic innervation.
Sivori M, Dempsey B, Chettouh Z, Boismoreau F, Ayerdi M, Eymael A, Baulande S, Lameiras S, Coulpier F, Delattre O, Rohrer H, Mirabeau O, Brunet JF
Elife. 2024 Mar 15. 12.

Distinguishing cophylogenetic signal from phylogenetic congruence clarifies the interplay between evolutionary history and species interactions.
Perez‑Lamarque B, Morlon H
Syst Biol. 2024 Mar 13.

Synapsin 2a tetramerisation selectively controls the presynaptic nanoscale organisation of reserve synaptic vesicles.
Longfield SF, Gormal RS, Feller M, Parutto P, Reingruber J, Wallis TP, Joensuu M, Augustine GJ, Martínez‑Mármol R, Holcman D, Meunier FA
Nat Commun. 2024 Mar 12. 15(1):2217.

Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS.
Trimbour R, Deutschmann IM, Cantini L
Bioinformatics. 2024 Mar 9.

Chaotic turnover of rare and abundant species in a strongly interacting model community.
Mallmin E, Traulsen A, De Monte S
Proc Natl Acad Sci U S A. 2024 Mar 12. 121(11):e2312822121.

Chat-based Generative Pretrained Transformers sits the European Diploma in Anaesthesiology and Intensive Care Part I examination : A computational study.
Andrei S, Longrois D, Stefan MG, Stefan G
Eur J Anaesthesiol. 2024 Apr 1. 41(4):323-325.

The intersection of sleep and synaptic translation in synaptic plasticity deficits in neurodevelopmental disorders.
Coulson RL, Mourrain P, Wang GX
J Comp Physiol B. 2024 Feb 24.

Metapopulation model of phage therapy of an acute Pseudomonas aeruginosa lung infection.
Rodriguez‑Gonzalez RA, Balacheff Q, Debarbieux L, Marchi J, Weitz JS
bioRxiv. 2024 Jan 31.

Caenorhabditis elegans immune responses to microsporidia and viruses.
González R, Félix MA
Dev Comp Immunol. 2024 May. 154:105148.

Phylogenetic conservation of the interdependent homeostatic relationship of sleep regulation and redox metabolism.
Terzi A, Ngo KJ, Mourrain P
J Comp Physiol B. 2024 Feb 7.

Microglia maintain structural integrity during fetal brain morphogenesis.
Lawrence AR, Canzi A, Bridlance C, Olivié N, Lansonneur C, Catale C, Pizzamiglio L, Kloeckner B, Silvin A, Munro DAD, Fortoul A, Boido D, Zehani F, Cartonnet H, Viguier S, Oller G, Squarzoni P, Candat A, Helft J, Allet C, Watrin F, Manent JB, Paoletti P, Thieffry D, Cantini L, Pridans C, Priller J, Gélot A, Giacobini P, Ciobanu L, Ginhoux F, Thion MS, Lokmane L, Garel S
Cell. 2024 Feb 15. 187(4):962-980.e19.

The plant POLYMERASE ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome-wide.
Blanco‑Touriñán N, Pérez‑Alemany J, Bourbousse C, Latrasse D, Ait‑Mohamed O, Benhamed M, Barneche F, Blázquez MA, Gallego‑Bartolomé J, Alabadí D
Plant Physiol. 2024 Jan 29.

Two adjacent NLR genes conferring quantitative resistance to clubroot disease in Arabidopsis are regulated by a stably inherited epiallelic variation.
Gravot A, Liégard B, Quadrana L, Veillet F, Aigu Y, Bargain T, Bénéjam J, Lariagon C, Lemoine J, Colot V, Manzanares‑Dauleux MJ, Jubault M
Plant Commun. 2024 Jan 23:100824.

Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories.
Papale A, Holcman D
PLoS Comput Biol. 2024 Jan. 20(1):e1011794.

Ordovician origin and subsequent diversification of the brown algae.
Choi SW, Graf L, Choi JW, Jo J, Boo GH, Kawai H, Choi CG, Xiao S, Knoll AH, Andersen RA, Yoon HS
Curr Biol. 2024 Feb 26. 34(4):740-754.e4.

Single-molecule characterization of Sen1 translocation properties provides insights into eukaryotic factor-dependent transcription termination.
Wang S, Han Z, Strick TR
Nucleic Acids Res. 2024 Jan 23.

The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development.
Godwin J, Govindasamy M, Nedounsejian K, March E, Halton R, Bourbousse C, Wolff L, Fort A, Krzyszton M, López Corrales J, Swiezewski S, Barneche F, Schubert D, Farrona S
Nat Commun. 2024 Jan 22. 15(1):667.

Naturally-associated bacteria modulate Orsay virus infection of Caenorhabditis elegans.
González R, Félix MA
PLoS Pathog. 2024 Jan. 20(1):e1011947.

Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes.
Julla JB, Girard D, Diedisheim M, Saulnier PJ, Tran Vuong B, Blériot C, Carcarino E, De Keizer J, Orliaguet L, Nemazanyy I, Potier C, Khider K, Tonui DC, Ejlalmanesh T, Ballaire R, Mambu Mambueni H, Germain S, Gaborit B, Vidal‑Trécan T, Riveline JP, Garchon HJ, Fenaille F, Lemoine S, Carlier A, Castelli F, Potier L, Masson D, Roussel R, Vandiedonck C, Hadjadj S, Alzaid F, Gautier JF, Venteclef N
Circ Res. 2024 Jan 19. 134(2):189-202.

Mapping general anesthesia states based on electro-encephalogram transition phases.
Loison V, Voskobiynyk Y, Lindquist B, Necula D, Longrois D, Paz J, Holcman D
Neuroimage. 2024 Jan. 285:120498.

Hypometabolism to survive the long polar night and subsequent successful return to light in the diatom Fragilariopsis cylindrus.
Joli N, Concia L, Mocaer K, Guterman J, Laude J, Guerin S, Sciandra T, Bruyant F, Ait‑Mohamed O, Beguin M, Forget MH, Bourbousse C, Lacour T, Bailleul B, Nef C, Savoie M, Tremblay JE, Campbell DA, Lavaud J, Schwab Y, Babin M, Bowler C
New Phytol. 2024 Mar. 241(5):2193-2208.

The genetic landscape of origins of replication in P. falciparum.
Castellano CM, Lacroix L, Mathis E, Prorok P, Hennion M, Lopez‑Rubio JJ, Méchali M, Gomes AR
Nucleic Acids Res. 2024 Jan 25. 52(2):660-676.

Molecular ecology of microbiomes in the wild : Common pitfalls, methodological advances and future directions.
Fountain‑Jones NM, Giraud T, Zinger L, Bik H, Creer S, Videvall E
Mol Ecol. 2024 Jan. 33(2):e17223.

rec-1 loss of function increases recombination in the central gene clusters at the expense of autosomal pairing centers.
Parée T, Noble L, Ferreira Gonçalves J, Teotónio H
Genetics. 2024 Mar 6. 226(3).

Live-Imaging Centriole Amplification in Mouse Brain Multiciliated Cells.
Boudjema AR, Al Jord A, Lemaître AI, Faucourt M, Delgehyr N, Spassky N, Meunier A
Methods Mol Biol. 2024. 2725:167-180.

Beyond reaction norms : the temporal dynamics of phenotypic plasticity.
Dupont L, Thierry M, Zinger L, Legrand D, Jacob S
Trends Ecol Evol. 2024 Jan. 39(1):41-51.

Regulation of cold-inducible RNA-binding protein (CIRBP) in response to cellular stresses.
Corre M, Lebreton A
Biochimie. 2024 Feb. 217:3-9.