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Publications

2024

Refocusing the microbial rare biosphere concept through a functional lens.
Litchman E, Villéger S, Zinger L, Auguet JC, Thuiller W, Munoz F, Kraft NJB, Philippot L, Violle C
Trends Ecol Evol. 2024 Jul 9.

Comparative transcriptomics reveal a novel tardigrade-specific DNA-binding protein induced in response to ionizing radiation.
Anoud M, Delagoutte E, Helleu Q, Brion A, Duvernois‑Berthet E, As M, Marques X, Lamribet K, Senamaud‑Beaufort C, Jourdren L, Adrait A, Heinrich S, Toutirais G, Hamlaoui S, Gropplero G, Giovannini I, Ponger L, Geze M, Blugeon C, Couté Y, Guidetti R, Rebecchi L, Giovannangeli C, De Cian A, Concordet JP
Elife. 2024 Jul 9. 13.

The TOPOVIBL meiotic DSB formation protein : new insights from its biochemical and structural characterization.
Diagouraga B, Tambones I, Carivenc C, Bechara C, Nadal M, de Massy B, le Maire A, Robert T
Nucleic Acids Res. 2024 Jul 5.

Identification of human host factors required for beta-defensin-2 expression in intestinal epithelial cells upon a bacterial challenge.
Wozniak W, Sechet E, Kwon YJ, Aulner N, Navarro L, Sperandio B
Sci Rep. 2024 Jul 4. 14(1):15442.

Seed or soil : Tracing back the plant mycobiota primary sources.
Laurent‑Webb L, Maurice K, Perez‑Lamarque B, Bourceret A, Ducousso M, Selosse MA
Environ Microbiol Rep. 2024 Jun. 16(3):e13301.

Experimental evolution of an RNA virus in Caenorhabditis elegans.
Castiglioni VG, Olmo‑Uceda MJ, Martín S, Félix MA, González R, Elena SF
Infect Genet Evol. 2024 Jun 18. 123:105623.

Identification and Organization of a Postural Anti-Gravity Module in the Cerebellar Vermis.
Gouhier A, Villette V, Mathieu B, Ayon A, Bradley J, Dieudonné S
Neuroscience. 2024 Jun 17.

Single-molecule reconstruction of eukaryotic factor-dependent transcription termination.
Xiong Y, Han W, Xu C, Shi J, Wang L, Jin T, Jia Q, Lu Y, Hu S, Dou SX, Lin W, Strick TR, Wang S, Li M
Nat Commun. 2024 Jun 15. 15(1):5113.

Natural variation in infection specificity of Caenorhabditis briggsae isolates by two RNA viruses.
Alkan C, Brésard G, Frézal L, Richaud A, Ruaud A, Zhang G, Félix MA
PLoS Pathog. 2024 Jun. 20(6):e1012259.

Wnt-Ror-Dvl signalling and the dystrophin complex organize planar-polarized membrane compartments in C. elegans muscles.
Peysson A, Zariohi N, Gendrel M, Chambert‑Loir A, Frébault N, Cheynet E, Andrini O, Boulin T
Nat Commun. 2024 Jun 10. 15(1):4935.

Detecting the ecological footprint of selection.
Luiselli J, Overcast I, Rominger A, Ruffley M, Morlon H, Rosindell J
PLoS One. 2024. 19(6):e0302794.

Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid.
Dorrell RG, Zhang Y, Liang Y, Gueguen N, Nonoyama T, Croteau D, Penot M, Adiba S, Bailleul B, Gros V, Pierella Karlusich JJ, Zweig N, Fernie AR, Jouhet J, Maréchal E, Bowler C
Plant Cell. 2024 Jun 6.

A Comparison of Presentation, Treatment, and Survival After Hepatocellular Carcinoma of Viral and Non-Viral Etiology in Damietta, Egypt, 2007-2019.
Jean K, Tawheed A, Luong Nguyen LB, Heikal T, Eldaly U, Gaber Elhadidy N, Elghaieb A, Aboudonia A, Tondeur L, Dublineau A, Fontanet A, El‑Kassas M
J Hepatocell Carcinoma. 2024. 11:997-1004.

Imbalanced speciation pulses sustain the radiation of mammals.
Quintero I, Lartillot N, Morlon H
Science. 2024 May 31. 384(6699):1007-1012.

A Screening Study Identified Decitabine as an Inhibitor of Equid Herpesvirus 4 That Enhances the Innate Antiviral Response.
Normand C, Thieulent CJ, Fortier C, Sutton G, Senamaud‑Beaufort C, Jourdren L, Blugeon C, Vidalain PO, Pronost S, Hue ES
Viruses. 2024 May 8. 16(5).

Exon-junction complex association with stalled ribosomes and slow translation-independent disassembly.
Bensaude O, Barbosa I, Morillo L, Dikstein R, Le Hir H
Nat Commun. 2024 May 17. 15(1):4209.

Indian Ocean temperature anomalies predict long-term global dengue trends.
Chen Y, Xu Y, Wang L, Liang Y, Li N, Lourenço J, Yang Y, Lin Q, Wang L, Zhao H, Cazelles B, Song H, Liu Z, Wang Z, Brady OJ, Cauchemez S, Tian H
Science. 2024 May 10. 384(6696):639-646.

Macroevolution of the plant-hummingbird pollination system.
Barreto E, Boehm MMA, Ogutcen E, Abrahamczyk S, Kessler M, Bascompte J, Dellinger AS, Bello C, Dehling DM, Duchenne F, Kaehler M, Lagomarsino LP, Lohmann LG, Maglianesi MA, Morlon H, Muchhala N, Ornelas JF, Perret M, Salinas NR, Smith SD, Vamosi JC, Varassin IG, Graham CH
Biol Rev Camb Philos Soc. 2024 May 5.

Deleterious effect of sustained neuroinflammation in pediatric traumatic brain injury.
Jacquens A, Csaba Z, Soleimanzad H, Bokobza C, Delmotte PR, Userovici C, Boussemart P, Chhor V, Bouvier D, van de Looij Y, Faivre V, Diao S, Lemoine S, Blugeon C, Schwendimann L, Young‑Ten P, Naffaa V, Laprevote O, Tanter M, Dournaud P, Van Steenwinckel J, Degos V, Gressens P
Brain Behav Immun. 2024 May 3. 120:99-116.

Microglial TNFα controls daily changes in synaptic GABAARs and sleep slow waves.
Pinto MJ, Bizien L, Fabre JMJ, Ðukanović N, Lepetz V, Henderson F, Pujol M, Sala RW, Tarpin T, Popa D, Triller A, Léna C, Fabre V, Bessis A
J Cell Biol. 2024 Jul 1. 223(7).

Correction : Isa et al. HSV-1 ICP22 Is a Selective Viral Repressor of Cellular RNA Polymerase II-Mediated Transcription Elongation. Vaccines 2021, 9, 1054.
Isa NF, Bensaude O, Aziz NC, Murphy S
Vaccines (Basel). 2024 Mar 26. 12(4).

Warming effects on lizard gut microbiome depend on habitat connectivity.
Fromm E, Zinger L, Pellerin F, Di Gesu L, Jacob S, Winandy L, Aguilée R, Parthuisot N, Iribar A, White J, Bestion E, Cote J
Proc Biol Sci. 2024 Apr 30. 291(2021):20240220.

Neurophotonics beyond the surface : unmasking the brain’s complexity exploiting optical scattering.
Xia F, Rimoli CV, Akemann W, Ventalon C, Bourdieu L, Gigan S, de Aguiar HB
Neurophotonics. 2024 Sep. 11(Suppl 1):S11510.

Structural basis of DNA crossover capture by Escherichia coli DNA gyrase.
Vayssières M, Marechal N, Yun L, Lopez Duran B, Murugasamy NK, Fogg JM, Zechiedrich L, Nadal M, Lamour V
Science. 2024 Apr 12. 384(6692):227-232.

Acousto-optic holography for pseudo-two-dimensional dynamic light patterning.
Akemann W, Bourdieu L
APL Photonics. 2024 Apr 1. 9(4):046103.

Caenorhabditis elegans defective-pharynx and constipated mutants are resistant to Orsay virus infection.
González R, Félix MA
MicroPubl Biol. 2024. 2024.

Fasting upregulates the monocarboxylate transporter MCT1 at the rat blood-brain barrier through PPAR δ activation.
Chasseigneaux S, Cochois‑Guégan V, Lecorgne L, Lochus M, Nicolic S, Blugeon C, Jourdren L, Gomez‑Zepeda D, Tenzer S, Sanquer S, Nivet‑Antoine V, Menet MC, Laplanche JL, Declèves X, Cisternino S, Saubaméa B
Fluids Barriers CNS. 2024 Apr 8. 21(1):33.

The TELOMERE REPEAT BINDING proteins TRB4 and TRB5 function as transcriptional activators of PRC2-controlled genes to regulate plant development.
Amiard S, Feit L, Vanrobays E, Simon L, Le Goff S, Loizeau L, Wolff L, Butter F, Bourbousse C, Barneche F, Tatout C, Probst AV
Plant Commun. 2024 Jul 8. 5(7):100890.

Neurophotonics beyond the Surface : Unmasking the Brain’s Complexity Exploiting Optical Scattering.
Xia F, Rimoli CV, Akemann W, Ventalon C, Bourdieu L, Gigan S, de Aguiar HB
ArXiv. 2024 Mar 21.

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities.
Giordano N, Gaudin M, Trottier C, Delage E, Nef C, Bowler C, Chaffron S
Nat Commun. 2024 Mar 28. 15(1):2721.

Overlapping action of T(3) and T(4) during Xenopus laevis development.
Tribondeau A, Du Pasquier D, Benchouaia M, Blugeon C, Buisine N, Sachs LM
Front Endocrinol (Lausanne). 2024. 15:1360188.

Observing G4 formation and its resolution by Pif1 in real time by manipulation under magnetic tweezers.
Valle‑Orero J, Rieu M, Allemand JF, Bujaa D, Joubert A, Tran PLT, Croquette V, Boulé JB
Methods Enzymol. 2024. 695:119-158.

Translational modulator ISRIB alleviates synaptic and behavioral phenotypes in Fragile X syndrome.
Coulson RL, Frattini V, Moyer CE, Hodges J, Walter P, Mourrain P, Zuo Y, Wang GX
iScience. 2024 Apr 19. 27(4):109259.

New plastids, old proteins : repeated endosymbiotic acquisitions in kareniacean dinoflagellates.
Novák Vanclová AM, Nef C, Füssy Z, Vancl A, Liu F, Bowler C, Dorrell RG
EMBO Rep. 2024 Apr. 25(4):1859-1885.

Neutral diversity in experimental metapopulations.
Doulcier G, Lambert A
Theor Popul Biol. 2024 Mar 15. 158:89-108.

Use of DNA forceps to measure receptor-ligand dissociation equilibrium constants in a single-molecule competition assay.
Stransky F, Kostrz D, Follenfant M, Pomplun S, Meyners C, Strick T, Hausch F, Gosse C
Methods Enzymol. 2024. 694:51-82.

The pelvic organs receive no parasympathetic innervation.
Sivori M, Dempsey B, Chettouh Z, Boismoreau F, Ayerdi M, Eymael A, Baulande S, Lameiras S, Coulpier F, Delattre O, Rohrer H, Mirabeau O, Brunet JF
Elife. 2024 Mar 15. 12.

Distinguishing cophylogenetic signal from phylogenetic congruence clarifies the interplay between evolutionary history and species interactions.
Perez‑Lamarque B, Morlon H
Syst Biol. 2024 Mar 13.

Synapsin 2a tetramerisation selectively controls the presynaptic nanoscale organisation of reserve synaptic vesicles.
Longfield SF, Gormal RS, Feller M, Parutto P, Reingruber J, Wallis TP, Joensuu M, Augustine GJ, Martínez‑Mármol R, Holcman D, Meunier FA
Nat Commun. 2024 Mar 12. 15(1):2217.

Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS.
Trimbour R, Deutschmann IM, Cantini L
Bioinformatics. 2024 May 2. 40(5).

Chaotic turnover of rare and abundant species in a strongly interacting model community.
Mallmin E, Traulsen A, De Monte S
Proc Natl Acad Sci U S A. 2024 Mar 12. 121(11):e2312822121.

Chat-based Generative Pretrained Transformers sits the European Diploma in Anaesthesiology and Intensive Care Part I examination : A computational study.
Andrei S, Longrois D, Stefan MG, Stefan G
Eur J Anaesthesiol. 2024 Apr 1. 41(4):323-325.

The intersection of sleep and synaptic translation in synaptic plasticity deficits in neurodevelopmental disorders.
Coulson RL, Mourrain P, Wang GX
J Comp Physiol B. 2024 Jun. 194(3):253-263.

Metapopulation model of phage therapy of an acute Pseudomonas aeruginosa lung infection.
Rodriguez‑Gonzalez RA, Balacheff Q, Debarbieux L, Marchi J, Weitz JS
bioRxiv. 2024 Jan 31.

Caenorhabditis elegans immune responses to microsporidia and viruses.
González R, Félix MA
Dev Comp Immunol. 2024 May. 154:105148.

Phylogenetic conservation of the interdependent homeostatic relationship of sleep regulation and redox metabolism.
Terzi A, Ngo KJ, Mourrain P
J Comp Physiol B. 2024 Jun. 194(3):241-252.

Microglia maintain structural integrity during fetal brain morphogenesis.
Lawrence AR, Canzi A, Bridlance C, Olivié N, Lansonneur C, Catale C, Pizzamiglio L, Kloeckner B, Silvin A, Munro DAD, Fortoul A, Boido D, Zehani F, Cartonnet H, Viguier S, Oller G, Squarzoni P, Candat A, Helft J, Allet C, Watrin F, Manent JB, Paoletti P, Thieffry D, Cantini L, Pridans C, Priller J, Gélot A, Giacobini P, Ciobanu L, Ginhoux F, Thion MS, Lokmane L, Garel S
Cell. 2024 Feb 15. 187(4):962-980.e19.

The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide.
Blanco‑Touriñán N, Pérez‑Alemany J, Bourbousse C, Latrasse D, Ait‑Mohamed O, Benhamed M, Barneche F, Blázquez MA, Gallego‑Bartolomé J, Alabadí D
Plant Physiol. 2024 Apr 30. 195(1):640-651.

Two adjacent NLR genes conferring quantitative resistance to clubroot disease in Arabidopsis are regulated by a stably inherited epiallelic variation.
Gravot A, Liégard B, Quadrana L, Veillet F, Aigu Y, Bargain T, Bénéjam J, Lariagon C, Lemoine J, Colot V, Manzanares‑Dauleux MJ, Jubault M
Plant Commun. 2024 May 13. 5(5):100824.

Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories.
Papale A, Holcman D
PLoS Comput Biol. 2024 Jan. 20(1):e1011794.

Ordovician origin and subsequent diversification of the brown algae.
Choi SW, Graf L, Choi JW, Jo J, Boo GH, Kawai H, Choi CG, Xiao S, Knoll AH, Andersen RA, Yoon HS
Curr Biol. 2024 Feb 26. 34(4):740-754.e4.

Single-molecule characterization of Sen1 translocation properties provides insights into eukaryotic factor-dependent transcription termination.
Wang S, Han Z, Strick TR
Nucleic Acids Res. 2024 Apr 12. 52(6):3249-3261.

The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development.
Godwin J, Govindasamy M, Nedounsejian K, March E, Halton R, Bourbousse C, Wolff L, Fort A, Krzyszton M, López Corrales J, Swiezewski S, Barneche F, Schubert D, Farrona S
Nat Commun. 2024 Jan 22. 15(1):667.

Naturally-associated bacteria modulate Orsay virus infection of Caenorhabditis elegans.
González R, Félix MA
PLoS Pathog. 2024 Jan. 20(1):e1011947.

Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes.
Julla JB, Girard D, Diedisheim M, Saulnier PJ, Tran Vuong B, Blériot C, Carcarino E, De Keizer J, Orliaguet L, Nemazanyy I, Potier C, Khider K, Tonui DC, Ejlalmanesh T, Ballaire R, Mambu Mambueni H, Germain S, Gaborit B, Vidal‑Trécan T, Riveline JP, Garchon HJ, Fenaille F, Lemoine S, Carlier A, Castelli F, Potier L, Masson D, Roussel R, Vandiedonck C, Hadjadj S, Alzaid F, Gautier JF, Venteclef N
Circ Res. 2024 Jan 19. 134(2):189-202.

Mapping general anesthesia states based on electro-encephalogram transition phases.
Loison V, Voskobiynyk Y, Lindquist B, Necula D, Longrois D, Paz J, Holcman D
Neuroimage. 2024 Jan. 285:120498.

Hypometabolism to survive the long polar night and subsequent successful return to light in the diatom Fragilariopsis cylindrus.
Joli N, Concia L, Mocaer K, Guterman J, Laude J, Guerin S, Sciandra T, Bruyant F, Ait‑Mohamed O, Beguin M, Forget MH, Bourbousse C, Lacour T, Bailleul B, Nef C, Savoie M, Tremblay JE, Campbell DA, Lavaud J, Schwab Y, Babin M, Bowler C
New Phytol. 2024 Mar. 241(5):2193-2208.

The genetic landscape of origins of replication in P. falciparum.
Castellano CM, Lacroix L, Mathis E, Prorok P, Hennion M, Lopez‑Rubio JJ, Méchali M, Gomes AR
Nucleic Acids Res. 2024 Jan 25. 52(2):660-676.

Molecular ecology of microbiomes in the wild : Common pitfalls, methodological advances and future directions.
Fountain‑Jones NM, Giraud T, Zinger L, Bik H, Creer S, Videvall E
Mol Ecol. 2024 Jan. 33(2):e17223.

rec-1 loss of function increases recombination in the central gene clusters at the expense of autosomal pairing centers.
Parée T, Noble L, Ferreira Gonçalves J, Teotónio H
Genetics. 2024 Mar 6. 226(3).

Live-Imaging Centriole Amplification in Mouse Brain Multiciliated Cells.
Boudjema AR, Al Jord A, Lemaître AI, Faucourt M, Delgehyr N, Spassky N, Meunier A
Methods Mol Biol. 2024. 2725:167-180.

Beyond reaction norms : the temporal dynamics of phenotypic plasticity.
Dupont L, Thierry M, Zinger L, Legrand D, Jacob S
Trends Ecol Evol. 2024 Jan. 39(1):41-51.

Regulation of cold-inducible RNA-binding protein (CIRBP) in response to cellular stresses.
Corre M, Lebreton A
Biochimie. 2024 Feb. 217:3-9.