Publications
Team Publications
Parée, T., and H. Teotónio. Preprint. Experimental tests on the evolution of sex and recombination and their adaptive significance. EcoEvoRxiv doi : 10.32942/X2Z03F.
Barghi N., Mallard, F., K. Otte. Under embargo. Experimental evolution in the genomic era. In : Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology. Oxford : Academic Press.
Travis, J., H. Teotónio, and C.F. Baer. Under embargo. History of evolutionary genetics. In : Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology. Oxford : Academic Press.
Parée, T., L. Noble, D. Roze and H. Teotónio. 2025. Selection can favor a recombination landscape that limits polygenic adaptation. Molecular Biology and Evolution 42 : msae273, doi : 10.1093/molbev/msae273.
Parée, T., L. Noble, J. Gonçalves and H. Teotónio. 2024. rec-1 loss of function is insufficient to homogenize crossover distribution in Caenorhabditis elegans. Genetics 226 : iyad205, doi : 10.1101/2023.07.18.549456.
Mallard, F., L. Noble, T. Guzella, B. Afonso, C. F. Baer and H. Teotónio. 2023. Phenotypic stasis with genetic divergence. Peer Community Journal 3 : e199, doi : 10.24072/pcjournal.349.
Mallard, F., B. Afonso and H. Teotónio. 2023. Selection and the direction of phenotypic evolution. eLife 12 : e80993, doi : 10.7554/eLife.80993.
Mallard, F., L. Noble, C.F. Baer and H. Teotónio. 2023. Variation in mutational (co)variances. G3, Genes, Genomes, Genetics, doi : 10.1093/g3journal/jkac335.
Meike, T.W., D. Agashe, S. F. Bailey, C. Bank, K. Bisschop, T. Blankers, J. Cairns, E. S. Colizzi, D. Cusseddu, M. M. Desai, M. Egas, J. Ellers, A. T. Groot, D.G. Hackel, M. L. Johnson, K. Kraaijeveld, J. Krug, L. Laan, M. Laessig, P. A. Lind, J. Meijer, L.M. Noble, S. Okasha, P.B. Rainey, D.E. Rozen, S. Shitut, S.J. Tans, O. Tenaillon, H. Teotónio, J. AGM de Visser, M.E. Visser, R.M.A. Vroomans, G.D.A. Werner, B. Wertheim, P.S. Pennings. 2022. Towards evolutionary predictions : current promises and challenges. Evolutionary Applications, doi : 10.1111/eva.13513.
Proulx, S.R. and H. Teotónio. 2022. The relative strength of selection on modifiers of genetic architecture under migration load. PLoS Genet, 18 : e1010350. doi : 10.1371/journal.pgen.1010350.
Thomasson, K.M., A. Franks, H. Teotónio and S.R. Proulx. 2021. Testing the adaptive value of sporulation in budding yeast using experimental evolution. Evolution, 75 : 1889-1897. doi : 10.1111/evo.14265.
Vigne, P, C Gimond, C. Ferrari, A. Vielle, J. Hallin, A. Pino-Querido, S. El Mouridi, C. Frøkjær-Jensen, T. Boulin, H. Teotónio, and C. Braendle. 2021. A single nucleotide change underlies the genetic assimilation of a plastic trait. Science Advances, 7 : eabd9941. doi : 10.1126/sciadv.abd9941.
Andréoletti, J., L. Noble and H. Teotónio. 2019. Reconstructing haplotypes from genotypes in multiparental populations using Artificial Neural Networks. Immex report. Hal Science https://hal.science/hal-02151672 ; archived at https://github.com/Jeremy-Andreoletti/Haplotype_imputation.
Noble, L., M.V. Rockman and H. Teotónio. 2021. Gene-level quantitative trait mapping in Caenorhabditis elegans. G3, Genes, Genomes, Genetics, 11 : jkaa061. doi : 10.1093/g3journal/jkaa061.
Chelo, I.M., B. Afonso, S. Carvalho, I. Theologidis, C. Goy, A. Pino-Querido, S.R. Proulx and H. Teotónio. 2019. Partial selfing can reduce genetic loads while maintaining diversity. G3 : Genes, Genomes, Genetics, 9 : 2811-2821, doi : 10.1534/g3.119.400239.
Proulx S.R., S. Dey, T.S. Guzella and H. Teotónio. 2019. How differing modes of transgenerational inheritance affect population viability in fluctuating environments. Ecology Letters 11 : 1767-1775. doi : 10.1111/ele.13355.
Papkou A., T.S. Guzella, W. Yang, S. Koepper, B. Pees, R. Schalkowski, M.-C. Barg, P. C. Rosenstiel, H. Teotónio and H. Schulenburg. 2018. The genomic basis of Red Queen dynamics during rapid reciprocal host–pathogen coevolution. Proceedings of the National Academy of Sciences USA, 116:923-928. doi : 10.1073/pnas.1810402116.
Guzella, T.S., S. Dey, I.M. Chelo, A. Pino-Querido, V.F. Pereira, S.R. Proulx and H. Teotónio. 2018. Slower environmental change hinders adaptation from standing genetic variation. PLOS Genetics 14 : e1007731, doi : 10.1371/journal.pgen.1007731.
Billiard S. and H. Teotónio. 2018. When ecology meets genetics : towards and integrated understanding of mating systems transitions and diversity. PCI Evolutionary Biology, doi : 10.24072/pci.evolbiol.100054.
Noble L., I. Chelo, T. Guzella, B. Afonso, D. Riccardi, P. Ammerman, A. Pino-Querido, S. Carvalho, A. Crist, A. Dayarian, B. Shraiman, M.V. Rockman and H. Teotónio. 2017. Polygenicity and epistasis underlie fitness-proximal traits in the Caenorhabditis elegans multiparental experimental evolution (CeMEE) panel. Genetics 207 : 1663, doi : 10.1534/genetics.117.300406.
Teotónio H., S. Estes, P.C. Phillips and C.F. Baer. 2017. Evolution experiments with Caenorhabditis nematodes. Genetics 206 : 691, doi : 10.1534/genetics.115.186288.
Proulx S.R. and H. Teotónio. 2017. What kind of maternal effects are selected for fluctuating environments ? American Naturalist 189, doi : 10.1086/691423.
Bierne, N. and M. Ainouche, M. Blum, M. Gouy, P-A. Gagneire, G. Mitta, Y. Le Maho, P. Gilbert, A. le Rouzic, G. Martin, H. Teotónio, S. Charlat, C. Montchamp, F. d’Ericco, L.-M. Chevin, T. Van Dooren, C. Mazé, C. Kerdelhué, R. Streiff, G. Achaz, P. Jarne, D. Joly, F. Viard, P. Capy. 2017. Adaptation-Adaptibilité : Comprendre la réponse adaptive avec pour l’objectif de la prédire. In CNRS-INEE Bordeaux Prospectives. https://www.inee.cnrs.fr/fr/prospectives-de-linstitut-ecologie-et-environnement
Poullet N., A. Vielle, C. Gimond, S. Carvalho, H. Teotónio and C. Braendle. 2016. Complex heterochrony underlies the evolution of hermaphrodite self-fertility and sex allocation in experimental C. elegans populations. Evolution 30 : 2357, doi : 10.1111/evo.13032.
Dey S., S.R. Proulx and H. Teotónio. 2016. Adaptation to temporally fluctuating environments by the evolution of maternal effects. PLOS Biology, 14 : e1002388, doi : 10.1371/journal.pbio.1002388.
Braendle, C. and H. Teotónio. 2015. Caenorhabditis nematodes as model organisms to study trait variation and its evolution. Worm, 4 : e1021109, doi : 10.1080/21624054.2015.1021109.
Carvalho, S., P.C. Phillips and H. Teotónio. 2014. Hermaphrodite life history and the maintenance of partial selfing in experimental populations of Caenorhabditis elegans. BMC Evolutionary Biology, 14 : 117, doi : 10.1186/1471-2148-14-117.
Chelo, I.M. 2014. Experimental determination of invasive fitness in Caenorhabditis elegans. Nature Protocols 6 : 1392. doi : 10.1038/nprot.2014.098.
Carvalho, S., I.M. Chelo, C. Goy and H. Teotónio. 2014. The role of hermaphrodites in the experimental evolution of increased outcrossing rates in Caenorhabditis elegans. BMC Evolutionary Biology, 14 : 116, doi : 10.1186/1471-2148-14-116.
Theologidis, I., I.M. Chelo, C. Goy and H. Teotónio. 2014. Reproductive assurance drives transitions to self-fertilization in experimental Caenorhabditis elegans. BMC Biology, 12 : 93, doi : 10.1186/s12915-014-0093-1.
Chelo, I.M., S. Carvalho, S.R. Proulx and H. Teotónio. 2013. The genetic basis and experimental evolution of inbreeding depression in Caenorhabditis elegans. Heredity, 112 : 248, doi : 10.1038/hdy.2013.100.
Chelo, I.M., J. Nédli, I. Gordo and H. Teotónio. 2013. An experimental test on the probability of extinction of new genetic variants. Nature Communications 4, doi : 10.1038/ncomms3417.
Chelo, I.M. and H. Teotónio. 2013. The opportunity for balancing selection in experimental populations of Caenorhabditis elegans. Evolution 67 : 142, doi : 10.1111/j.1558-5646.2012.01744.x.
Bradic, M., H. Teotónio and R. Borowsky. 2013. The population genomics of repeated evolution in the blind cavefish Astyanax mexicanus. Molecular Biology and Evolution, 11 : 2383, doi : 10.1093/molbev/mst136.
Carneiro, M., S.J. E. Baird, S. Afonso, E. Ramirez, P. Tarroso, H. Teotónio, R. Villafuerte, M. W. Nachman and N. Ferrand. 2013. Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit. Molecular Ecology 22 : 2511, doi : 10.1111/mec.12272.
Teotónio H., S. Carvalho, D. Manoel, M. Roque and I.M. Chelo. 2012. Evolution of outcrossing in experimental populations of Caenorhabditis elegans. PLOS One 7, doi : 10.1371/journal.pone.0035811.
Bradic, M., J. Costa, and I.M. Chelo. 2011. Genotyping with Sequenom. In : Molecular Methods for Evolutionary Genetics, eds. V. Orgogozo, and M.V. Rockman. Humana Press, New York. doi : 10.1007/978-1-61779-228-1_11
Teotónio H., I.M. Chelo, M. Bradic, M.R. Rose and A.D. Long. 2009. Experimental evolution reveals natural selection on standing genetic variation. Nature Genetics 41 : 251, doi : 10.1038/ng.289.
Estes, S. and H. Teotónio. 2009. The experimental study of reverse evolution. In : Experimental Evolution, eds. T. Garland and M.R. Rose. University of California Press, LA, USA. doi : 10.1525/california/9780520247666.003.0007.
Teotónio H., M.R. Rose and S. Proulx. 2009. Phenotypic plasticity and evolvability : an empirical test with experimental evolution. In : Phenotypic Plasticity in Insects, eds. D. Whitman and T.N. Ananthakrishnan. Science Publishers, Inc. Plymouth, UK. doi : 10.1201/9780367803568.
Carvalho, S. and L. Perfeito. 2009. Adaptação e Aptidão. In Evolução : Conceitos e Debates, Esfera do Caos Editores, Lisbon. https://www.worldcat.org/title/934356627
Lopes P., E. Sucena, M. Santos, and S. Magalhães. 2008. Rapid experimental evolution of pesticide resistance in C. elegans entails no costs and affects the mating system. PLOS ONE 3:e374. doi : 10.1371/journal.pone.0003741
Teotónio, H. and A. Coutinho. 2008. Evolutionary theory and human knowledge. In Sigila, 22. Les Éditions de la Maison des sciences de l’homme, Paris. https://www.editions-msh.fr/livre/sigila-n-22-automne-hiver-2008/
Manoel D., S. Carvalho, P.C. Phillips and H. Teotónio. 2007. Selection against males in Caenorhabditis elegans. Proceedings of the Royal Society B 274 : 417. doi : 10.1098/rspb.2006.3739
Teotónio H., D. Manoel and P.C. Phillips. 2006. Genetic variation for outcrossing among Caenorhabditis elegans isolates. Evolution 60 : 1300. http://www.jstor.org/stable/4095251.
Carvalho S., A. Barrière, and A.P. daSilva. 2006. The world of a worm : a framework for Caenorhabditis evolution. EMBO reports 7 : 981. Doi : 10.1038/sj.embor.7400798
Other Team Member Publications
Mallard, F., V Nolte, C Schlötterer. 2021. The evolution of phenotypic plasticity in response to temperature stress. Genome Biology and Evolution 12 (12), 2429-2440. doi : 10.1093/gbe/evaa206
Noble, L.M., J Yuen, L Stevens, N Moya, R Persaud, M Moscatelli, JL Jackson, G Zhang, R Chitrakar, LR Baugh, C Braendle, EC Andersen, HS Seidel, MV Rockman. 2021. Selfing is the safest sex for Caenorhabditis tropicalis. eLife 2021 ;10:e62587, doi : 10.7554/eLife.62587.
Mallard, F., V Le Bourlot, C Le Coeur, M Avnaim, R Péronnet, D Claessen, T Tully 2020. From individuals to populations : How intraspecific competition shapes thermal reaction norms Functional Ecology 34 (3), 669-683. doi : 10.1111/1365-2435.13516
Noble, L.M., A. Miah, T. Kaur, M.R. V. Rockman. 2020. The ancestral C. elegans cuticle suppresses rol-1. G3. doi : 10.1101/2020.02.07.938696.
Mallard, F., V Nolte, R Tobler, M Kapun, C Schlötterer. 2018. A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila. Genome biology 19 (1), 1-15 doi : 10.1186/s13059-018-1503-4.
Mallard, F. , AM Jakšić, C Schlötterer. 2018. Contesting the evidence for non-adaptive plasticity. Nature 555 (7698), E21-E22 doi : 10.1038/nature25496.
Nouhaud, P.*, Mallard, F*., Poupardin, R., Barghi, N., Schlötterer, C. (2018). High-throughput fecundity measurements in Drosophila. Scientific reports, 8(1), 4469. *contributed equally to this work
Mallard, F., Farina, M., Tully, T. (2015). Within species variation in long-term trajectories of growth, fecundity and
mortality in the Collembola Folsomia candida. Journal of evolutionary biology, 28(12), 2275-2284.
Le Bourlot, V., Mallard, F., Claessen, D., Tully, T. (2015). A simple graphical method for displaying structured population dynamics and STdiag, its implementation in an R package.
Geslin, B., Baude, M., Mallard, F., Dajoz, I. (2014). Effect of local spatial plant distribution and conspecific density on bumble bee foraging behaviour. Ecological Entomology, 39(3), 334-342.
Mallard, F., Le Bourlot V. Tully T. (2013) Automated image analysis to measure and count organisms moving on an heterogeneous and faintly contrasted background.PloS one, 8,e64387.
Mallard, F., Le Bourlot V. Tully T. (2012) Automatic particle analysis as sensors for life history studies in experimental microcosms Sensors for Ecology, Towards integrated knowledge of ecosystems, Galliard JF, Guarini JM, Gaill F. pp. 163-182. CNRS, Paris.
Marleau, J.N., Guichard F., Mallard F. , Loreau M. (2010) Nutrient flows between ecosystems can destabilize simple food chains. Journal of Theoretical Biology, 266, 162-174.
Michie, L.J., Mallard F., Majerus M.E. Jiggins F.M. (2010) Melanic through nature or nurture : genetic polymorphism and phenotypic plasticity in Harmonia axyridis. Journal of evolutionary biology, 23, 1699-1707.
Rose M.R. , H.B. Passananti, A.K. Chippindale, J.P. Phelan, M. Matos, H. Teotónio and L.D. Mueller. 2005. The effects of evolution are local : evidence from experimental evolution in Drosophila. Integrative Comparative Biology 45 : 486. doi : 10.1093/icb/45.3.486.
Teotónio H., M. Matos and M.R. Rose. 2004. Quantitative genetics of functional characters in Drosophila melanogaster populations subjected to laboratory selection. Journal of Genetics 83 : 265. doi : 10.1007/BF02717896
Teotónio, H., M. Matos and M.R. Rose. 2002. Reverse evolution of fitness in Drosophila melanogaster. Journal of Evolutionary Biology 15:608. doi : 10.1046/j.1420-9101.2002.00424.x.
Teotónio, H., and M.R. Rose. 2001. Perspective : reverse evolution. Evolution 55 : 653. doi : 10.1554/0014-3820(2001)055[0653:pre]2.0.co ;2
Borash, D.J., H. Teotónio, M.R. Rose, and L.D. Mueller. 2000. Density-dependent natural selection in Drosophila : correlations between feeding rate, developmental time and viability. Journal of Evolutionary Biology 13 : 181. doi : 10.1046/j.1420-9101.2000.00167.x.
Matos, M., A. Levy, C. Rego, H. Teotónio, and M.R. Rose. 2000. The evolutionary no man’s land between the wild and the lab. Trends in Ecology and Evolution 15 : 206. doi : 10.1016/s0169-5347(00)01844-9
Teotónio, H., and M.R. Rose. 2000. Variation in the reversibility of evolution. Nature 408:463. doi : 10.1038/35044070.