Publications
Sasaki T, Ro K, Caillieux E, Manabe R, Bohl-Viallefond G, Baduel P, Colot V, Kakutani T, Quadrana L. (2022) Fast co-evolution of anti-silencing systems shapes the invasiveness of Mu-like DNA transposons in eudicots. EMBO J.
Baduel P, Leduque B, Ignace A, Gy I, Gil J, Loudet O, Colot V, Quadrana L. (2021) Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana. Genome Biol.
Baduel P, Quadrana L, Colot V. (2021) Efficient detection of transposable element insertion polymorphisms between genomes using short-read sequencing data. Methods Mol Biol.
Quadrana L, Silveira AB, Caillieux E, Colot V. (2021) Detection of transposable element insertions in Arabidopsis using sequence capture. Methods Mol Biol.
Baduel P, Colot V (2021) The epiallelic potential of transposable elements and its evolutionary significance in plants. Philos. Trans. R. Soc. Lond. B Biol. Sci.
Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D (2021) Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nat Commun
Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez-Gómez JM, Colot V, Quadrana L. (2020) The impact of transposable elements on tomato diversity. Nat Commun
Van Dooren TJM, Silveira AB, Gilbault E, Jiménez-Gómez JM, Martin A, Bach L, Tisné S, Quadrana L, Loudet O, Colot V. (2020) Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects. J Exp Bot
Baduel P, Quadrana L, Hunter B, Bomblies K, Colot V. (2019) Relaxed purifying selection in autopolyploids drives transposable element over-accumulation which provides variants for local adaptation. Nat Commun
Quadrana L, Etcheverry M, Gilly A, Caillieux E, Madoui MA, Guy J, Bortolini Silveira A, Engelen S, Baillet V, Wincker P, Aury JM, Colot V. (2019) Transposition favors the generation of large effect mutations that may facilitate rapid adaption. Nat Commun
Yang L, Perrera V, Saplaoura E, Apelt F, Bahin M, Kramdi A, Olas J, Mueller-Roeber B, Sokolowska E, Zhang W, Li R, Pitzalis N, Heinlein M, Zhang S, Genovesio A, Colot V, Kragler F. (2019). m5C methylation guides systemic transport of messenger RNA over graft junctions in plants. Curr Biol
Furci L, Jain R, Stassen J, Berkowitz O, Whelan J, Roquis D, Baillet V, Colot V, Johannes F, Ton J. (2019). Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis. Elife
Liégard B, Baillet V, Etcheverry M, Joseph E, Lariagon C, Lemoine J, Evrard A, Colot V, Gravot A, Manzanares-Dauleux M.J, Jubault M. (2018). Quantitative resistance to clubroot infection mediated by transgenerational epigenetic variation in Arabidopsis. New Phytol
Morao AK, Caillieux E, Colot V, and Roudier F. (2018). Cell type-specific profiling of chromatin modifications and associated proteins. Methods Mol Biol
Chica C, Louis A, Roest Crollius H, Colot V, Roudier F. (2017). Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation. Genome Biol
Bouyer D, Kramdi A, Kassam M, Heese M, Schnittger A, Roudier F, Colot, V. (2017). DNA methylation dynamics during early plant life. Genome Biol
Rosspopoff O, Chelysheva L, Saffar J, Lecorgne L, Gey D, Caillieux E, Colot V, Roudier F, Hilson P, Berthome R, Da Costa M, Rech P. (2017). Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development. Development
Morao AK, Bouyer D, Roudier F. (2016). Emerging concepts in chromatin-level regulation of plant cell differentiation : timing, counting, sensing and maintaining. Curr Opin Plant Biol
Quadrana L, Colot V. (2016). Plant Transgenerational Epigenetics. Annu Rev Genet
de Lucas M, Pu L, Turco G, Gaudinier A, Morao AK, Harashima H, Kim D, Ron M, Sugimoto K, Roudier F, Brady SM. (2016). Transcriptional regulation of Arabidopsis Polycomb Repressive Complex 2 coordinates cell-type proliferation and differentiation. Plant Cell
Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME. (2016). Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J
Schalk C, Drevensek S, Kramdi A, Kassam M, Ahmed I, Cognat V, Graindorge S, Bergdoll M, Baumberger N, Heintz D, Bowler C, Genschik P, Barneche F, Colot V, Molinier J. (2016). DNA DAMAGE BINDING PROTEIN 2 (DDB2) shapes the DNA methylation landscape. Plant Cell
Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot, V. (2016). The Arabidopsis thaliana mobilome and its impact at the species level.Elife
Marques-Bueno MDM, Morao AK, Cayrel A, Platre MP, Barberon M, Caillieux E, Colot V, Jaillais Y, Roudier F, Vert G. (2016). A versatile Multisite Gateway-compatible promoter and transgenic line collection for cell type-specific functional genomics in Arabidopsis. Plant J
Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, Meyerowitz E, Nemhauser J, Nordborg M, Pikaard C, Shanklin J, Somerville C, Stitt M, Torii KU, Waese J, Wagner D, McCourt P. (2016). 50 years of Arabidopsis research : highlights and future directions. New Phytol
