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Publications

2021

Editorial : Latest Advances on Excitatory Synapse Biology.
Huber KM, Paoletti P, Sjöström PJ
Front Synaptic Neurosci. 2021. 13:768651.

A role for AKT1 in nonsense-mediated mRNA decay.
Palma M, Leroy C, Salomé‑Desnoulez S, Werkmeister E, Kong R, Mongy M, Le Hir H, Lejeune F
Nucleic Acids Res. 2021 Oct 11.

Author Correction : Macroscale patterns of oceanic zooplankton composition and size structure.
Brandão MC, Benedetti F, Martini S, Soviadan YD, Irisson JO, Romagnan JB, Elineau A, Desnos C, Jalabert L, Freire AS, Picheral M, Guidi L, Gorsky G, Bowler C, Karp‑Boss L, Henry N, de Vargas C, Sullivan MB, Stemmann L, Lombard F
Sci Rep. 2021 Oct 6. 11(1):20226.

Non-REM and REM/paradoxical sleep dynamics across phylogeny.
Jaggard JB, Wang GX, Mourrain P
Curr Opin Neurobiol. 2021 Sep 25. 71:44-51.

Inertial Measurement of Head Tilt in Rodents : Principles and Applications to Vestibular Research.
Fayat R, Delgado Betancourt V, Goyallon T, Petremann M, Liaudet P, Descossy V, Reveret L, Dugué GP
Sensors (Basel). 2021 Sep 21. 21(18).

Transcriptome and Methylome Analysis Reveal Complex Cross-Talks between Thyroid Hormone and Glucocorticoid Signaling at Xenopus Metamorphosis.
Buisine N, Grimaldi A, Jonchere V, Rigolet M, Blugeon C, Hamroune J, Sachs LM
Cells. 2021 Sep 9. 10(9).

Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly-The Ithomiini Melinaea marsaeus.
Piron‑Prunier F, Persyn E, Legeai F, McClure M, Meslin C, Robin S, Alves‑Carvalho S, Mohammad A, Blugeon C, Jacquin‑Joly E, Montagné N, Elias M, Gauthier J
J Evol Biol. 2021 Sep 27.

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees.
Dufayard JF, Bocs S, Guignon V, Larivière D, Louis A, Oubda N, Rouard M, Ruiz M, de Lamotte F
NAR Genom Bioinform. 2021 Sep. 3(3):lqab088.

Single-molecule kinetic locking allows fluorescence-free quantification of protein/nucleic-acid binding.
Rieu M, Valle‑Orero J, Ducos B, Allemand JF, Croquette V
Commun Biol. 2021 Sep 15. 4(1):1083.

Nanoscale molecular architecture controls calcium diffusion and ER replenishment in dendritic spines.
Basnayake K, Mazaud D, Kushnireva L, Bemelmans A, Rouach N, Korkotian E, Holcman D
Sci Adv. 2021 Sep 17. 7(38):eabh1376.

NMDARs in granule cells contribute to parallel fiber-Purkinje cell synaptic plasticity and motor learning.
Schonewille M, Girasole AE, Rostaing P, Mailhes‑Hamon C, Ayon A, Nelson AB, Triller A, Casado M, De Zeeuw CI, Bouvier G
Proc Natl Acad Sci U S A. 2021 Sep 14. 118(37).

Coming of age for COI metabarcoding of whole organism community DNA : Towards bioinformatic harmonisation.
Creedy TJ, Andújar C, Meramveliotakis E, Noguerales V, Overcast I, Papadopoulou A, Morlon H, Vogler AP, Emerson BC, Arribas P
Mol Ecol Resour. 2021 Sep 8.

The bowfin genome illuminates the developmental evolution of ray-finned fishes.
Thompson AW, Hawkins MB, Parey E, Wcisel DJ, Ota T, Kawasaki K, Funk E, Losilla M, Fitch OE, Pan Q, Feron R, Louis A, Montfort J, Milhes M, Racicot BL, Childs KL, Fontenot Q, Ferrara A, David SR, McCune AR, Dornburg A, Yoder JA, Guiguen Y, Roest Crollius H, Berthelot C, Harris MP, Braasch I
Nat Genet. 2021 Sep. 53(9):1373-1384.

An alternative D. melanogaster 7SK snRNP.
Nguyen D, Buisine N, Fayol O, Michels AA, Bensaude O, Price DH, Uguen P
BMC Mol Cell Biol. 2021 Aug 31. 22(1):43.

Selective Cleaning of Wild Caenorhabditis Nematodes to Enrich for Intestinal Microbiome Bacteria.
Morgan E, Longares JF, Félix MA, Luallen RJ
J Vis Exp. 2021 Aug 13. (174).

Environmental vulnerability of the global ocean epipelagic plankton community interactome.
Chaffron S, Delage E, Budinich M, Vintache D, Henry N, Nef C, Ardyna M, Zayed AA, Junger PC, Galand PE, Lovejoy C, Murray AE, Sarmento H, Acinas SG, Babin M, Iudicone D, Jaillon O, Karsenti E, Wincker P, Karp‑Boss L, Sullivan MB, Bowler C, de Vargas C, Eveillard D
Sci Adv. 2021 Aug. 7(35).

OTX2 Homeoprotein Functions in Adult Choroid Plexus.
Planques A, Oliveira Moreira V, Benacom D, Bernard C, Jourdren L, Blugeon C, Dingli F, Masson V, Loew D, Prochiantz A, Di Nardo AA
Int J Mol Sci. 2021 Aug 19. 22(16).

Organization of DNA Replication Origin Firing in Xenopus Egg Extracts : The Role of Intra-S Checkpoint.
Ciardo D, Haccard O, Narassimprakash H, Arbona JM, Hyrien O, Audit B, Marheineke K, Goldar A
Genes (Basel). 2021 Aug 9. 12(8).

Tempo and mode of morphological evolution are decoupled from latitude in birds.
Drury JP, Clavel J, Tobias JA, Rolland J, Sheard C, Morlon H
PLoS Biol. 2021 Aug. 19(8):e3001270.

Unique properties of dually innervated dendritic spines in pyramidal neurons of the somatosensory cortex uncovered by 3D correlative light and electron microscopy.
Gemin O, Serna P, Zamith J, Assendorp N, Fossati M, Rostaing P, Triller A, Charrier C
PLoS Biol. 2021 Aug. 19(8):e3001375.

Functional analysis of a de novo variant in the neurodevelopment and generalized epilepsy disease gene NBEA.
Boulin T, Itani O, El Mouridi S, Leclercq‑Blondel A, Gendrel M, Macnamara E, Soldatos A, Murphy JL, Gorman MP, Lindsey A, Shimada S, Turner D, Silverman GA, Baldridge D, Malicdan MC, Schedl T, Pak SC
Mol Genet Metab. 2021 Aug 9.

Identification and functional modelling of plausibly causative cis-regulatory variants in a highly-selected cohort with X-linked intellectual disability.
Bengani H, Grozeva D, Moyon L, Bhatia S, Louros SR, Hope J, Jackson A, Prendergast JG, Owen LJ, Naville M, Rainger J, Grimes G, Halachev M, Murphy LC, Spasic‑Boskovic O, van Heyningen V, Kind P, Abbott CM, Osterweil E, Raymond FL, Roest Crollius H, FitzPatrick DR
PLoS One. 2021. 16(8):e0256181.

Full-Length Transcriptome of Thalassiosira weissflogii as a Reference Resource and Mining of Chitin-Related Genes.
Cheng H, Bowler C, Xing X, Bulone V, Shao Z, Duan D
Mar Drugs. 2021 Jul 13. 19(7).

GluN2A and GluN2B NMDA receptors use distinct allosteric routes.
Tian M, Stroebel D, Piot L, David M, Ye S, Paoletti P
Nat Commun. 2021 Aug 5. 12(1):4709.

Macroscale patterns of oceanic zooplankton composition and size structure.
Brandão MC, Benedetti F, Martini S, Soviadan YD, Irisson JO, Romagnan JB, Elineau A, Desnos C, Jalabert L, Freire AS, Picheral M, Guidi L, Gorsky G, Bowler C, Karp‑Boss L, Henry N, de Vargas C, Sullivan MB, Stemmann L, Lombard F
Sci Rep. 2021 Aug 3. 11(1):15714.

Dynamics of the COVID-19 epidemic in Ireland under mitigation.
Cazelles B, Nguyen‑Van‑Yen B, Champagne C, Comiskey C
BMC Infect Dis. 2021 Aug 3. 21(1):735.

Positive allosteric modulation of NMDA receptors : mechanisms, physiological impact and therapeutic potential.
Geoffroy C, Paoletti P, Mony L
J Physiol. 2021 Aug 2.

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes.
Sellis D, Guérin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, Duret L, Duharcourt S
PLoS Biol. 2021 Jul. 19(7):e3001309.

A mechanistic and data-driven reconstruction of the time-varying reproduction number : Application to the COVID-19 epidemic.
Cazelles B, Champagne C, Nguyen‑Van‑Yen B, Comiskey C, Vergu E, Roche B
PLoS Comput Biol. 2021 Jul. 17(7):e1009211.

Cascading effects of moth outbreaks on subarctic soil food webs.
Calderón‑Sanou I, Münkemüller T, Zinger L, Schimann H, Yoccoz NG, Gielly L, Foulquier A, Hedde M, Ohlmann M, Roy M, Si‑Moussi S, Thuiller W
Sci Rep. 2021 Jul 23. 11(1):15054.

When the cerebellum holds the starting gun.
Frontera JL, Léna C
Neuron. 2021 Jul 21. 109(14):2207-2209.

The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime.
Otte KA, Nolte V, Mallard F, Schlötterer C
Genome Biol. 2021 Jul 16. 22(1):211.

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods.
Pierella Karlusich JJ, Pelletier E, Lombard F, Carsique M, Dvorak E, Colin S, Picheral M, Cornejo‑Castillo FM, Acinas SG, Pepperkok R, Karsenti E, de Vargas C, Wincker P, Bowler C, Foster RA
Nat Commun. 2021 Jul 6. 12(1):4160.

Fast and accurate estimation of species-specific diversification rates using data augmentation.
Maliet O, Morlon H
Syst Biol. 2021 Jul 6.

A morphological trait involved in reproductive isolation between Drosophila sister species is sensitive to temperature.
Peluffo AE, Hamdani M, Vargas‑Valderrama A, David JR, Mallard F, Graner F, Courtier‑Orgogozo V
Ecol Evol. 2021 Jun. 11(12):7492-7506.

Gating mechanism and a modulatory niche of human GluN1-GluN2A NMDA receptors.
Wang H, Lv S, Stroebel D, Zhang J, Pan Y, Huang X, Zhang X, Paoletti P, Zhu S
Neuron. 2021 Aug 4. 109(15):2443-2456.e5.

Capturing the rapidly evolving study of adaptation.
Fruciano C, Franchini P, Jones JC
J Evol Biol. 2021 Jun. 34(6):856-865.

Logical modelling of in vitro differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions.
Nuñez‑Reza KJ, Naldi A, Sánchez‑Jiménez A, Leon‑Apodaca AV, Santana MA, Thomas‑Chollier M, Thieffry D, Medina‑Rivera A
Interface Focus. 2021 Jun. 11(4):20200061.

Archaea : A Gold Mine for Topoisomerase Diversity.
Garnier F, Couturier M, Débat H, Nadal M
Front Microbiol. 2021. 12:661411.

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms.
Bulankova P, Sekulić M, Jallet D, Nef C, van Oosterhout C, Delmont TO, Vercauteren I, Osuna‑Cruz CM, Vancaester E, Mock T, Sabbe K, Daboussi F, Bowler C, Vyverman W, Vandepoele K, De Veylder L
Curr Biol. 2021 Aug 9. 31(15):3221-3232.e9.

Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis.
Huang Y, Sicar S, Ramirez‑Prado JS, Manza‑Mianza D, Antunez‑Sanchez J, Brik‑Chaouche R, Rodriguez‑Granados NY, An J, Bergounioux C, Mahfouz MM, Hirt H, Crespi M, Concia L, Barneche F, Amiard S, Probst AV, Gutierrez‑Marcos J, Ariel F, Raynaud C, Latrasse D, Benhamed M
Genome Res. 2021 Jun 3.

Glycine agonism in ionotropic glutamate receptors.
Stroebel D, Mony L, Paoletti P
Neuropharmacology. 2021 Aug 1. 193:108631.

Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut.
Zhang F, Weckhorst JL, Assié A, Hosea C, Ayoub CA, Khodakova AS, Cabrera ML, Vidal Vilchis D, Félix MA, Samuel BS
Curr Biol. 2021 Jun 21. 31(12):2603-2618.e9.

Differential regulation of glycinergic and GABAergic nanocolumns at mixed inhibitory synapses.
Yang X, Le Corronc H, Legendre P, Triller A, Specht CG
EMBO Rep. 2021 Jul 5. 22(7):e52154.

Biodiversity monitoring using environmental DNA.
Rodríguez‑Ezpeleta N, Zinger L, Kinziger A, Bik HM, Bonin A, Coissac E, Emerson BC, Lopes CM, Pelletier TA, Taberlet P, Narum S
Mol Ecol Resour. 2021 Jul. 21(5):1405-1409.

Testing the adaptive value of sporulation in budding yeast using experimental evolution.
Thomasson KM, Franks A, Teotónio H, Proulx SR
Evolution. 2021 Jul. 75(7):1889-1897.

Modeling the Th17 and Tregs Paradigm : Implications for Cancer Immunotherapy.
Corral‑Jara KF, Rosas da Silva G, Fierro NA, Soumelis V
Front Cell Dev Biol. 2021. 9:675099.

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.
Acinas SG, Sánchez P, Salazar G, Cornejo‑Castillo FM, Sebastián M, Logares R, Royo‑Llonch M, Paoli L, Sunagawa S, Hingamp P, Ogata H, Lima‑Mendez G, Roux S, González JM, Arrieta JM, Alam IS, Kamau A, Bowler C, Raes J, Pesant S, Bork P, Agustí S, Gojobori T, Vaqué D, Sullivan MB, Pedrós‑Alió C, Massana R, Duarte CM, Gasol JM
Commun Biol. 2021 May 21. 4(1):604.

Author Correction : The impact of transposable elements on tomato diversity.
Domínguez M, Dugas E, Benchouaia M, Leduque B, Jiménez‑Gómez JM, Colot V, Quadrana L
Nat Commun. 2021 May 21. 12(1):3203.

Folding and persistence times of intramolecular G-quadruplexes transiently embedded in a DNA duplex.
Tran PLT, Rieu M, Hodeib S, Joubert A, Ouellet J, Alberti P, Bugaut A, Allemand JF, Boulé JB, Croquette V
Nucleic Acids Res. 2021 May 21. 49(9):5189-5201.

Coevolutionary transitions from antagonism to mutualism explained by the Co-Opted Antagonist Hypothesis.
Johnson CA, Smith GP, Yule K, Davidowitz G, Bronstein JL, Ferrière R
Nat Commun. 2021 May 17. 12(1):2867.

Carbon Dioxide Concentration Mechanisms in Natural Populations of Marine Diatoms : Insights From Tara Oceans.
Pierella Karlusich JJ, Bowler C, Biswas H
Front Plant Sci. 2021. 12:657821.

Ecological recipes for selecting community function.
De Monte S
Nat Ecol Evol. 2021 Jul. 5(7):894-895.

Analysis of waveform and amplitude of mouse rod and cone flash responses.
Abtout A, Fain G, Reingruber J
J Physiol. 2021 Jul. 599(13):3295-3312.

Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana.
Baduel P, Leduque B, Ignace A, Gy I, Gil J Jr, Loudet O, Colot V, Quadrana L
Genome Biol. 2021 May 6. 22(1):138.

A microfluidic dosimetry cell to irradiate solutions with poorly penetrating radiations : a step towards online dosimetry for synchrotron beamlines.
Huart L, Nicolas C, Hervé du Penhoat MA, Guigner JM, Gosse C, Palaudoux J, Lefrançois S, Mercere P, Dasilva P, Renault JP, Chevallard C
J Synchrotron Radiat. 2021 May 1. 28(Pt 3):778-789.

Jumpstarting evolution : How transposition can facilitate adaptation to rapid environmental changes.
Baduel P, Quadrana L
Curr Opin Plant Biol. 2021 Jun. 61:102043.

Correction to : Macromolecular interactions in vitro, comparing classical and novel approaches.
Velours C, Aumont‑Nicaise M, Uebel S, England P, Velazquez‑Campoy A, Stroebel D, Bec G, Soule P, Quétard C, Ebel C, Roussel A, Charbonnier JB, Varela PF
Eur Biophys J. 2021 May. 50(3-4):331.

Efficient Detection of Transposable Element Insertion Polymorphisms Between Genomes Using Short-Read Sequencing Data.
Baduel P, Quadrana L, Colot V
Methods Mol Biol. 2021. 2250:157-169.

Detection of Transposable Element Insertions in Arabidopsis Using Sequence Capture.
Quadrana L, Silveira AB, Caillieux E, Colot V
Methods Mol Biol. 2021. 2250:141-155.

Chromatin stability generated by stochastic binding and unbinding of cross-linkers at looping sites revealed by Markov models.
Papale A, Holcman D
Phys Biol. 2021 Jun 1. 18(4).

The epiallelic potential of transposable elements and its evolutionary significance in plants.
Baduel P, Colot V
Philos Trans R Soc Lond B Biol Sci. 2021 Jun 7. 376(1826):20200123.

How does epigenetics influence the course of evolution ?
Ashe A, Colot V, Oldroyd BP
Philos Trans R Soc Lond B Biol Sci. 2021 Jun 7. 376(1826):20200111.

A decadal perspective on north water microbial eukaryotes as Arctic Ocean sentinels.
Freyria NJ, Joli N, Lovejoy C
Sci Rep. 2021 Apr 16. 11(1):8413.

Engineered chlorophyll catabolism conferring predator resistance for microalgal biomass production.
Kashiyama Y, Ishizuka Y, Terauchi I, Matsuda T, Maeda Y, Yoshino T, Matsumoto M, Yabuki A, Bowler C, Tanaka T
Metab Eng. 2021 Jul. 66:79-86.

Magnetic Tweezers-Based Single-Molecule Assays to Study Interaction of E. coli SSB with DNA and RecQ Helicase.
Bagchi D, Zhang W, Hodeib S, Ducos B, Croquette V, Manosas M
Methods Mol Biol. 2021. 2281:93-115.

DNA molecular combing-based replication fork directionality profiling.
Blin M, Lacroix L, Petryk N, Jaszczyszyn Y, Chen CL, Hyrien O, Le Tallec B
Nucleic Acids Res. 2021 Jul 9. 49(12):e69.

Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms.
Kang Y, Thieffry D, Cantini L
Front Genet. 2021. 12:617282.

Cotranscriptional R-loop formation by Mfd involves topological partitioning of DNA.
Portman JR, Brouwer GM, Bollins J, Savery NJ, Strick TR
Proc Natl Acad Sci U S A. 2021 Apr 13. 118(15).

Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans.
Lee D, Zdraljevic S, Stevens L, Wang Y, Tanny RE, Crombie TA, Cook DE, Webster AK, Chirakar R, Baugh LR, Sterken MG, Braendle C, Félix MA, Rockman MV, Andersen EC
Nat Ecol Evol. 2021 Jun. 5(6):794-807.

In Memoriam Claudina Rodrigues-Pousada (1941-2021), a dedicated woman in science.
Bensaude O
Cell Stress Chaperones. 2021 May. 26(3):455-456.

Macromolecular interactions in vitro, comparing classical and novel approaches.
Velours C, Aumont‑Nicaise M, Uebel S, England P, Velazquez‑Campoy A, Stroebel D, Bec G, Soule P, Quétard C, Ebel C, Roussel A, Charbonnier JB, Varela PF
Eur Biophys J. 2021 May. 50(3-4):313-330.

On the importance of evolutionary constraint for regulatory sequence identification.
Giudicelli F, Roest Crollius H
Brief Funct Genomics. 2021 Mar 23.

Stochastic Epidemic Models inference and diagnosis with Poisson Random Measure Data Augmentation.
Nguyen‑Van‑Yen B, Del Moral P, Cazelles B
Math Biosci. 2021 May. 335:108583.

DET1-mediated COP1 regulation avoids HY5 activity over second-site gene targets to tune plant photomorphogenesis.
Cañibano E, Bourbousse C, García‑León M, Garnelo Gómez B, Wolff L, García‑Baudino C, Lozano‑Durán R, Barneche F, Rubio V, Fonseca S
Mol Plant. 2021 Jun 7. 14(6):963-982.

Publisher Correction : Detection of genetic variation and base modifications at base-pair resolution on both DNA and RNA.
Wang Z, Maluenda J, Giraut L, Vieille T, Lefevre A, Salthouse D, Radou G, Moulinas R, Astete S, D’Avezac P, Smith G, André C, Allemand JF, Bensimon D, Croquette V, Ouellet J, Hamilton G
Commun Biol. 2021 Mar 11. 4(1):346.

Gene-level quantitative trait mapping in Caenorhabditis elegans.
Noble LM, Rockman MV, Teotónio H
G3 (Bethesda). 2021 Feb 9. 11(2).

Iron metabolism strategies in diatoms.
Gao X, Bowler C, Kazamia E
J Exp Bot. 2021 Mar 17. 72(6):2165-2180.

Evolution : Drivers in a Traffic Jam.
Félix MA
Curr Biol. 2021 Mar 8. 31(5):R257-R260.

Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones.
Kirstein N, Buschle A, Wu X, Krebs S, Blum H, Kremmer E, Vorberg IM, Hammerschmidt W, Lacroix L, Hyrien O, Audit B, Schepers A
Elife. 2021 Mar 8. 10.

Comparison of SYK Signaling Networks Reveals the Potential Molecular Determinants of Its Tumor-Promoting and Suppressing Functions.
Buffard M, Naldi A, Freiss G, Deckert M, Radulescu O, Coopman PJ, Larive RM
Biomolecules. 2021 Feb 18. 11(2).

Sushi domain-containing protein 4 controls synaptic plasticity and motor learning.
González‑Calvo I, Iyer K, Carquin M, Khayachi A, Giuliani FA, Sigoillot SM, Vincent J, Séveno M, Veleanu M, Tahraoui S, Albert M, Vigy O, Bosso‑Lefèvre C, Nadjar Y, Dumoulin A, Triller A, Bessereau JL, Rondi‑Reig L, Isope P, Selimi F
Elife. 2021 Mar 4. 10.

Exon junction complex dependent mRNA localization is linked to centrosome organization during ciliogenesis.
Kwon OS, Mishra R, Safieddine A, Coleno E, Alasseur Q, Faucourt M, Barbosa I, Bertrand E, Spassky N, Le Hir H
Nat Commun. 2021 Mar 1. 12(1):1351.

A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.
Safieddine A, Coleno E, Salloum S, Imbert A, Traboulsi AM, Kwon OS, Lionneton F, Georget V, Robert MC, Gostan T, Lecellier CH, Chouaib R, Pichon X, Le Hir H, Zibara K, Mueller F, Walter T, Peter M, Bertrand E
Nat Commun. 2021 Mar 1. 12(1):1352.

Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates.
Andrade P, Gazda MA, Araújo PM, Afonso S, Rasmussen JA, Marques CI, Lopes RJ, Gilbert MTP, Carneiro M
PLoS Genet. 2021 Feb. 17(2):e1009404.

Thermal and pH Stabilities of i-DNA : Confronting in vitro Experiments with Models and In-Cell NMR Data.
Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL
Angew Chem Int Ed Engl. 2021 Apr 26. 60(18):10286-10294.

Temporally regulated cell migration is sensitive to variation in body size.
Dubois C, Gupta S, Mugler A, Félix MA
Development. 2021 Mar 5. 148(5).

Dynamics of Ku and bacterial non-homologous end-joining characterized using single DNA molecule analysis.
Öz R, Wang JL, Guerois R, Goyal G, Kk S, Ropars V, Sharma R, Koca F, Charbonnier JB, Modesti M, Strick TR, Westerlund F
Nucleic Acids Res. 2021 Mar 18. 49(5):2629-2641.

Complex Response of the Chlorarachniophyte Bigelowiella natans to Iron Availability.
Kotabova E, Malych R, Pierella Karlusich JJ, Kazamia E, Eichner M, Mach J, Lesuisse E, Bowler C, Prášil O, Sutak R
mSystems. 2021 Feb 9. 6(1).

Parallel, linear, and subnanometric 3D tracking of microparticles with Stereo Darkfield Interferometry.
Rieu M, Vieille T, Radou G, Jeanneret R, Ruiz‑Gutierrez N, Ducos B, Allemand JF, Croquette V
Sci Adv. 2021 Feb. 7(6).

Parallel trends in the transmission of SARS-CoV-2 and retail/recreation and public transport mobility during non-lockdown periods.
Cazelles B, Comiskey C, Nguyen‑Van‑Yen B, Champagne C, Roche B
Int J Infect Dis. 2021 Mar. 104:693-695.

Reciprocal stabilization of glycine receptors and gephyrin scaffold proteins at inhibitory synapses.
Chapdelaine T, Hakim V, Triller A, Ranft J, Specht CG
Biophys J. 2021 Mar 2. 120(5):805-817.

Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum.
Hoguin A, Rastogi A, Bowler C, Tirichine L
Sci Rep. 2021 Feb 3. 11(1):2954.

A single-nucleotide change underlies the genetic assimilation of a plastic trait.
Vigne P, Gimond C, Ferrari C, Vielle A, Hallin J, Pino‑Querido A, El Mouridi S, Mignerot L, Frøkjær‑Jensen C, Boulin T, Teotónio H, Braendle C
Sci Adv. 2021 Feb. 7(6).

Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum.
Zhao X, Rastogi A, Deton Cabanillas AF, Ait Mohamed O, Cantrel C, Lombard B, Murik O, Genovesio A, Bowler C, Bouyer D, Loew D, Lin X, Veluchamy A, Vieira FRJ, Tirichine L
New Phytol. 2021 Mar. 229(6):3208-3220.

Detection of genetic variation and base modifications at base-pair resolution on both DNA and RNA.
Wang Z, Maluenda J, Giraut L, Vieille T, Lefevre A, Salthouse D, Radou G, Moulinas R, Astete S, D’Avezac P, Smith G, André C, Allemand JF, Bensimon D, Croquette V, Ouellet J, Hamilton G
Commun Biol. 2021 Jan 29. 4(1):128.

Density-dependent natural selection mediates harvest-induced trait changes.
Bouffet‑Halle A, Mériguet J, Carmignac D, Agostini S, Millot A, Perret S, Motard E, Decenciere B, Edeline E
Ecol Lett. 2021 Apr. 24(4):648-657.

Learning-dependent plasticity in the antennal lobe improves discrimination and recognition of odors in the honeybee.
Marachlian E, Klappenbach M, Locatelli F
Cell Tissue Res. 2021 Jan. 383(1):165-175.

Dysregulation of the NRG1/ERBB pathway causes a developmental disorder with gastrointestinal dysmotility in humans.
Le TL, Galmiche L, Levy J, Suwannarat P, Hellebrekers DM, Morarach K, Boismoreau F, Theunissen TE, Lefebvre M, Pelet A, Martinovic J, Gelot A, Guimiot F, Calleroz A, Gitiaux C, Hully M, Goulet O, Chardot C, Drunat S, Capri Y, Bole‑Feysot C, Nitschké P, Whalen S, Mouthon L, Babcock HE, Hofstra R, de Coo IF, Tabet AC, Molina TJ, Keren B, Brooks A, Smeets HJ, Marklund U, Gordon CT, Lyonnet S, Amiel J, Bondurand N
J Clin Invest. 2021 Mar 15. 131(6).

Aggregative cycles evolve as a solution to conflicts in social investment.
Miele L, De Monte S
PLoS Comput Biol. 2021 Jan. 17(1):e1008617.

The Arabidopsis active demethylase ROS1 cis-regulates defence genes by erasing DNA methylation at promoter-regulatory regions.
Halter T, Wang J, Amesefe D, Lastrucci E, Charvin M, Singla Rastogi M, Navarro L
Elife. 2021 Jan 20. 10.

Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function.
Khouider S, Borges F, LeBlanc C, Ungru A, Schnittger A, Martienssen R, Colot V, Bouyer D
Nat Commun. 2021 Jan 18. 12(1):410.

Polycomb mutant partially suppresses DNA hypomethylation-associated phenotypes in Arabidopsis.
Rougée M, Quadrana L, Zervudacki J, Hure V, Colot V, Navarro L, Deleris A
Life Sci Alliance. 2021 Feb. 4(2).

Large, Stable Spikes Exhibit Differential Broadening in Excitatory and Inhibitory Neocortical Boutons.
Ritzau‑Jost A, Tsintsadze T, Krueger M, Ader J, Bechmann I, Eilers J, Barbour B, Smith SM, Hallermann S
Cell Rep. 2021 Jan 12. 34(2):108612.

Connecting high-throughput biodiversity inventories : Opportunities for a site-based genomic framework for global integration and synthesis.
Arribas P, Andújar C, Bidartondo MI, Bohmann K, Coissac É, Creer S, deWaard JR, Elbrecht V, Ficetola GF, Goberna M, Kennedy S, Krehenwinkel H, Leese F, Novotny V, Ronquist F, Yu DW, Zinger L, Creedy TJ, Meramveliotakis E, Noguerales V, Overcast I, Morlon H, Vogler AP, Papadopoulou A, Emerson BC
Mol Ecol. 2021 Mar. 30(5):1120-1135.

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes.
Dorrell RG, Villain A, Perez‑Lamarque B, Audren de Kerdrel G, McCallum G, Watson AK, Ait‑Mohamed O, Alberti A, Corre E, Frischkorn KR, Pierella Karlusich JJ, Pelletier E, Morlon H, Bowler C, Blanc G
Proc Natl Acad Sci U S A. 2021 Jan 26. 118(4).

The Tumor Microenvironment Impairs Th1 IFNγ Secretion through Alternative Splicing Modifications of Irf1 Pre-mRNA.
Bernard A, Hibos C, Richard C, Viltard E, Chevrier S, Lemoine S, Melin J, Humblin E, Mary R, Accogli T, Chalmin F, Bruchard M, Peixoto P, Hervouet E, Apetoh L, Ghiringhelli F, Végran F, Boidot R
Cancer Immunol Res. 2021 Mar. 9(3):324-336.

Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer.
Cantini L, Zakeri P, Hernandez C, Naldi A, Thieffry D, Remy E, Baudot A
Nat Commun. 2021 Jan 5. 12(1):124.

Mechanism of efficient double-strand break repair by a long non-coding RNA.
Thapar R, Wang JL, Hammel M, Ye R, Liang K, Sun C, Hnizda A, Liang S, Maw SS, Lee L, Villarreal H, Forrester I, Fang S, Tsai MS, Blundell TL, Davis AJ, Lin C, Lees‑Miller SP, Strick TR, Tainer JA
Nucleic Acids Res. 2021 Jan 25. 49(2):1199-1200.

Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species.
Sawka‑Gądek N, Potekhin A, Singh DP, Grevtseva I, Arnaiz O, Penel S, Sperling L, Tarcz S, Duret L, Nekrasova I, Meyer E
Genome Biol Evol. 2021 Feb 3. 13(2).

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo.
Floc’hlay S, Molina MD, Hernandez C, Haillot E, Thomas‑Chollier M, Lepage T, Thieffry D
Development. 2021 Jan 20. 148(2).

One progenitor to generate them all : new evidence for multi-fated neural progenitors.
Ortiz‑Álvarez G, Spassky N
Curr Opin Neurobiol. 2021 Feb. 66:186-194.

Fate restrictions in embryonic neural progenitors.
Fischer E, Morin X
Curr Opin Neurobiol. 2021 Feb. 66:178-185.

Being superficial : a developmental viewpoint on cortical layer 1 wiring.
Genescu I, Garel S
Curr Opin Neurobiol. 2021 Feb. 66:125-134.

Validated MAGIC and GWAS population mapping reveals the link between vitamin E content and natural variation in chorismate metabolism in tomato.
Burgos E, Belen De Luca M, Diouf I, de Haro LA, Albert E, Sauvage C, Tao ZJ, Bermudez L, Asís R, Nesi AN, Matringe M, Bréhélin C, Guiraud T, Ferrand C, Atienza I, Jorly J, Mauxion JP, Baldet P, Fernie AR, Quadrana L, Rothan C, Causse M, Carrari F
Plant J. 2021 Feb. 105(4):907-923.

Sharing and reporting benefits from biodiversity research.
Marden E, Abbott RJ, Austerlitz F, Ortiz‑Barrientos D, Baucom RS, Bongaerts P, Bonin A, Bonneaud C, Browne L, Alex Buerkle C, Caicedo AL, Coltman DW, Cruzan MB, Davison A, DeWoody JA, Dumbrell AJ, Emerson BC, Fountain‑Jones NM, Gillespie R, Giraud T, Hansen MM, Hodgins KA, Heuertz M, Hirase S, Hooper R, Hohenlohe P, Kane NC, Kelley JL, Kinziger AP, McKenzie VJ, Moreau CS, Nazareno AG, Pelletier TA, Pemberton JM, Qu Y, Renaut S, Riginos C, Rodríguez‑Ezpeleta N, Rogers SM, Russell JA, Schoville SD, Shi S, Smith M, Sork VL, Stone GN, Taberlet P, Videvall E, Waits L, Warschefsky E, Wayne RK, Whibley A, Willoughby J, Yoder JB, Zinger L, Sibbett B, Narum S, Rieseberg LH
Mol Ecol. 2021 Mar. 30(5):1103-1107.

New insights into homoeologous copy number variations in the hexaploid wheat genome.
Juery C, Concia L, De Oliveira R, Papon N, Ramírez‑González R, Benhamed M, Uauy C, Choulet F, Paux E
Plant Genome. 2021 Mar. 14(1):e20069.

Trans-synaptic interactions of ionotropic glutamate receptors.
Fossati M, Charrier C
Curr Opin Neurobiol. 2021 Feb. 66:85-92.

Global functional and phylogenetic structure of avian assemblages across elevation and latitude.
Jarzyna MA, Quintero I, Jetz W
Ecol Lett. 2021 Feb. 24(2):196-207.

Type 2 diabetes is associated with impaired jejunal enteroendocrine GLP-1 cell lineage in human obesity.
Osinski C, Le Gléau L, Poitou C, de Toro‑Martin J, Genser L, Fradet M, Soula HA, Leturque A, Blugeon C, Jourdren L, Hubert EL, Clément K, Serradas P, Ribeiro A
Int J Obes (Lond). 2021 Jan. 45(1):170-183.

Frequency of mispackaging of Prochlorococcus DNA by cyanophage.
Laurenceau R, Raho N, Forget M, Arellano AA, Chisholm SW
ISME J. 2021 Jan. 15(1):129-140.

Architecture and function of NMDA receptors : an evolutionary perspective.
Stroebel D, Paoletti P
J Physiol. 2021 May. 599(10):2615-2638.

A comparative pan-genomic analysis of 53 C. pseudotuberculosis strains based on functional domains.
Bernardes JS, Eberle RJ, Vieira FRJ, Coronado MA
J Biomol Struct Dyn. 2021 Nov. 39(18):6974-6986.

Multifaceted activities of the plant SAGA complex.
Grasser KD, Rubio V, Barneche F
Biochim Biophys Acta Gene Regul Mech. 2021 Feb. 1864(2):194613.

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
Touré V, Vercruysse S, Acencio ML, Lovering RC, Orchard S, Bradley G, Casals‑Casas C, Chaouiya C, Del‑Toro N, Flobak Å, Gaudet P, Hermjakob H, Hoyt CT, Licata L, Lægreid A, Mungall CJ, Niknejad A, Panni S, Perfetto L, Porras P, Pratt D, Saez‑Rodriguez J, Thieffry D, Thomas PD, Türei D, Kuiper M
Bioinformatics. 2021 Apr 5. 36(24):5712-5718.

Microglia modulate gliotransmission through the regulation of VAMP2 proteins in astrocytes.
Takata‑Tsuji F, Chounlamountri N, Do LD, Philippot C, Novion Ducassou J, Couté Y, Ben Achour S, Honnorat J, Place C, Pascual O
Glia. 2021 Jan. 69(1):61-72.